Academic lineage
- Jason A Papin
- Bernhard Ø Palsson - Ph.D. student
Histone Deacetylase Inhibition by Gut Microbe-Generated Short-Chain Fatty Acids Entrains Intestinal Epithelial Circadian Rhythms
- Jibraan A Fawad, Deborah H Luzader, Gabriel F Hanson, …, Christian I Hong, Jason A Papin, Sean R Moore
- Gastroenterology, 10.1053/j.gastro.2022.07.051
Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models
- Maureen A Carey, Gregory L Medlock, MichaÅ‚ Stolarczyk, …, William A Petri, Jennifer L Guler, Jason A Papin
- PLoS Comput Biol, 10.1371/journal.pcbi.1009870
Enhancing Microbiome Research through Genome-Scale Metabolic Modeling
- Nana Y D Ankrah, David B Bernstein, Matthew Biggs, …, Alan R Pacheco, Snorre Sulheim, Gregory L Medlock
- mSystems, 10.1128/msystems.00599-21
Mucosal Genomics Implicate Lymphocyte Activation and Lipid Metabolism in Refractory Environmental Enteric Dysfunction
- Yael Haberman, Najeeha T Iqbal, Sudhir Ghandikota, …, Sean R Moore, Syed Asad Ali, Lee A Denson
- Gastroenterology, 10.1053/j.gastro.2021.01.221
Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions
- Gregory L Medlock, Thomas J Moutinho, Jason A Papin
- PLoS Comput Biol, 10.1371/journal.pcbi.1007847
MEMOTE for standardized genome-scale metabolic model testing
- Christian Lieven, Moritz E Beber, Brett G Olivier, …, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang
- Nat Biotechnol, 10.1038/s41587-020-0446-y
Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning
- Gregory L Medlock, Jason A Papin
- Cell Syst, 10.1016/j.cels.2019.11.006
Inferring Metabolic Mechanisms of Interaction within a Defined Gut Microbiota
- Gregory L Medlock, Maureen A Carey, Dennis G McDuffie, …, Jonathan R Swann, Glynis L Kolling, Jason A Papin
- Cell Syst, 10.1016/j.cels.2018.08.003
A novel mouse model of Campylobacter jejuni enteropathy and diarrhea
- Natasa Giallourou, Gregory L Medlock, David T Bolick, …, Patricia Guerry, Jonathan R Swann, Richard L Guerrant
- PLoS Pathog, 10.1371/journal.ppat.1007083
Influential Parameters for the Analysis of Intracellular Parasite Metabolomics
- Maureen A Carey, Vincent Covelli, Audrey Brown, …, Jessica G Cooper, Jason A Papin, Jennifer L Guler
- mSphere, 10.1128/msphere.00097-18
Novel co-culture plate enables growth dynamic-based assessment of contact-independent microbial interactions
- Thomas J Moutinho, John C Panagides, Matthew B Biggs, Gregory L Medlock, Glynis L Kolling, Jason A Papin
- PLoS One, 10.1371/journal.pone.0182163
Cross-modulation of pathogen-specific pathways enhances malnutrition during enteric co-infection with Giardia lamblia and enteroaggregative Escherichia coli
- Luther A Bartelt, David T Bolick, Jordi Mayneris-Perxachs, …, Jason Papin, Jonathan R Swann, Richard L Guerrant
- PLoS Pathog, 10.1371/journal.ppat.1006471
Increased Urinary Trimethylamine N-Oxide Following Cryptosporidium Infection and Protein Malnutrition Independent of Microbiome Effects
- David T Bolick, Jordi Mayneris-Perxachs, Greg L Medlock, …, Jason A Papin, Jon R Swann, Richard L Guerrant
- J Infect Dis, 10.1093/infdis/jix234
Systems-level metabolism of the altered Schaedler flora, a complete gut microbiota
- Matthew B Biggs, Gregory L Medlock, Thomas J Moutinho, …, Jonathan R Swann, Glynis L Kolling, Jason A Papin
- ISME J, 10.1038/ismej.2016.130