Personalized Clostridioides difficile engraftment risk prediction and probiotic therapy assessment in the human gut
- Alex Carr, Nitin S Baliga, Christian Diener, …, Nitin S Baliga, Christian Diener, Sean M Gibbons
- None, 10.1101/2023.04.28.538771
Generally-healthy individuals with aberrant bowel movement frequencies show enrichment for microbially-derived blood metabolites associated with impaired kidney function
- James P Johnson, Christian Diener, Anne E Levine, …, Leroy Hood, Noa Rappaport, Sean M Gibbons
- None, 10.1101/2023.03.04.531100
Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention
- Kengo Watanabe, Tomasz Wilmanski, Christian Diener, …, Leroy Hood, Nathan D Price, Noa Rappaport
- Nat Med, 10.1038/s41591-023-02248-0
Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut
- Nick Bohmann, Tomasz Wilmanski, Lisa Levy, …, Noa Rappaport, Christian Diener, Sean M Gibbons
- None, 10.1101/2023.02.28.530516
Constraint-Based Reconstruction and Analyses of Metabolic Models: Open-Source Python Tools and Applications to Cancer
- Rachel H Ng, Jihoon W Lee, Priyanka Baloni, Christian Diener, James R Heath, Yapeng Su
- None, 10.3389/fonc.2022.914594
Heterogeneity in statin responses explained by variation in the human gut microbiome
- Tomasz Wilmanski, Sergey A Kornilov, Christian Diener, …, Noa Rappaport, Andrew T Magis, Sean M Gibbons
- Med, 10.1016/j.medj.2022.04.007
Genomic and functional characterization of a mucosal symbiont involved in early-stage colorectal cancer
- Melissa C Kordahi, Ian B Stanaway, Marion Avril, …, William M Grady, Cynthia W Ko, R William DePaolo
- Cell Host Microbe, 10.1016/j.chom.2021.08.013
Baseline Gut Metagenomic Functional Gene Signature Associated with Variable Weight Loss Responses following a Healthy Lifestyle Intervention in Humans
- Christian Diener, Shizhen Qin, Yong Zhou, …, Nathan D Price, Leroy Hood, Sean M Gibbons
- mSystems, 10.1128/msystems.00964-21
From taxonomy to metabolic output: what factors define gut microbiome health?
- Tomasz Wilmanski, Noa Rappaport, Christian Diener, Sean M Gibbons, Nathan D Price
- Gut Microbes, 10.1080/19490976.2021.1907270
Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut
- Christian Diener, Anna C H Hoge, Sean M Kearney, …, Robert L Moritz, Susan E Erdman, Sean M Gibbons
- Commun Biol, 10.1038/s42003-021-01841-8
Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics
- Jessica A Day, Christian Diener, Anne E Otwell, …, Abdirizak A Ali, Sean M Gibbons, Nitin S Baliga
- PLoS One, 10.1371/journal.pone.0247534
Progressive Shifts in the Gut Microbiome Reflect Prediabetes and Diabetes Development in a Treatment-Naive Mexican Cohort
- Christian Diener, MarÃa de Lourdes Reyes-Escogido, Lilia M Jimenez-Ceja, …, Eric Alm, Osbaldo Resendis-Antonio, Rodolfo Guardado-Mendoza
- Front Endocrinol (Lausanne), 10.3389/fendo.2020.602326
MEMOTE for standardized genome-scale metabolic model testing
- Christian Lieven, Moritz E Beber, Brett G Olivier, …, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang
- Nat Biotechnol, 10.1038/s41587-020-0446-y