Academic lineage
- Bernhard Ø Palsson - Postdoctoral Associate
Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine
- Almut Heinken, Johannes Hertel, Geeta Acharya, …, Christopher S Henry, Ronan M T Fleming, Ines Thiele
- Nat Biotechnol, 10.1038/s41587-022-01628-0
MetaboAnnotator: an efficient toolbox to annotate metabolites in genome-scale metabolic reconstructions
- Ines Thiele, German Preciat, Ronan M T Fleming
- Bioinformatics, 10.1093/bioinformatics/btac596
Whole-body metabolic modelling predicts isoleucine dependency of SARS-CoV-2 replication
- Ines Thiele, Ronan M T Fleming, Ines Thiele, Ronan M T Fleming
- None, 10.1016/j.csbj.2022.07.019
Phenotype-Agnostic Molecular Subtyping of Neurodegenerative Disorders: The Cincinnati Cohort Biomarker Program (CCBP)
- Andrea Sturchio, Luca Marsili, Joaquin A Vizcarra, …, Long J Lu, Max A Little, Alberto J Espay
- None, 10.3389/fnagi.2020.553635
Structural conserved moiety splitting of a stoichiometric matrix
- Susan Ghaderi, Hulda S Haraldsdóttir, Masoud Ahookhosh, Sylvain Arreckx, Ronan M T Fleming
- J Theor Biol, 10.1016/j.jtbi.2020.110276
MEMOTE for standardized genome-scale metabolic model testing
- Christian Lieven, Moritz E Beber, Brett G Olivier, …, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang
- Nat Biotechnol, 10.1038/s41587-020-0446-y
Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease
- Almut Heinken, Dmitry A Ravcheev, Federico Baldini, Laurent Heirendt, Ronan M T Fleming, Ines Thiele
- Microbiome, 10.1186/s40168-019-0689-3