Academic lineage
- Jason A Papin
- Bernhard Ø Palsson - Ph.D. student
Diverse environmental bacteria displaying activity against Phakopsora pachyrhizi , the cause of soybean rust
- Mathias Twizeyimana, Philip E Hammer, Esther Gachango, …, Matthew B Biggs, James Kremer, David J Ingham
- None, 10.3389/fpls.2023.1080116
Enhancing Microbiome Research through Genome-Scale Metabolic Modeling
- Nana Y D Ankrah, David B Bernstein, Matthew Biggs, …, Alan R Pacheco, Snorre Sulheim, Gregory L Medlock
- mSystems, 10.1128/msystems.00599-21
Novel co-culture plate enables growth dynamic-based assessment of contact-independent microbial interactions
- Thomas J Moutinho, John C Panagides, Matthew B Biggs, Gregory L Medlock, Glynis L Kolling, Jason A Papin
- PLoS One, 10.1371/journal.pone.0182163
Growth-altering microbial interactions are responsive to chemical context
- Angela Liu, Anne M Archer, Matthew B Biggs, Jason A Papin
- PLoS One, 10.1371/journal.pone.0164919
Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBA
- Matthew B Biggs, Jason A Papin
- PLoS Comput Biol, 10.1371/journal.pcbi.1005413
Systems-level metabolism of the altered Schaedler flora, a complete gut microbiota
- Matthew B Biggs, Gregory L Medlock, Thomas J Moutinho, …, Jonathan R Swann, Glynis L Kolling, Jason A Papin
- ISME J, 10.1038/ismej.2016.130
Metabolic network-guided binning of metagenomic sequence fragments
- Matthew B Biggs, Jason A Papin
- Bioinformatics, 10.1093/bioinformatics/btv671
Novel multiscale modeling tool applied to Pseudomonas aeruginosa biofilm formation
- Matthew B Biggs, Jason A Papin
- PLoS One, 10.1371/journal.pone.0078011
Rhizobial plasmids that cause impaired symbiotic nitrogen fixation and enhanced host invasion
- Matthew B Crook, Daniel P Lindsay, Matthew B Biggs, …, Mark J Clement, Sharon R Long, Joel S Griffitts
- Mol Plant Microbe Interact, 10.1094/mpmi-02-12-0052-r