Academic lineage
- Jens Nielsen - PhD student
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
- Iván Domenzain, Benjamín Sánchez, Mihail Anton, …, John P Morrissey, Nikolaus Sonnenschein, Jens Nielsen
- Nat Commun, 10.1038/s41467-022-31421-1
Proteome allocations change linearly with the specific growth rate of Saccharomyces cerevisiae under glucose limitation
- Jianye Xia, Benjamin J Sánchez, Yu Chen, Kate Campbell, Sergo Kasvandik, Jens Nielsen
- Nat Commun, 10.1038/s41467-022-30513-2
Genome-scale metabolic modeling of P. thermoglucosidasius NCIMB 11955 reveals metabolic bottlenecks in anaerobic metabolism
- Viviënne Mol, Martyn Bennett, Benjamín J Sánchez, …, Alex Toftgaard Nielsen, David J Leak, Nikolaus Sonnenschein
- Metab Eng, 10.1016/j.ymben.2021.03.002
Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism
- Jie Zhang, Søren D Petersen, Tijana Radivojevic, …, Jens Nielsen, Jay D Keasling, Michael K Jensen
- Nat Commun, 10.1038/s41467-020-17910-1
MEMOTE for standardized genome-scale metabolic model testing
- Christian Lieven, Moritz E Beber, Brett G Olivier, …, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang
- Nat Biotechnol, 10.1038/s41587-020-0446-y
Model-Assisted Fine-Tuning of Central Carbon Metabolism in Yeast through dCas9-Based Regulation
- Raphael Ferreira, Christos Skrekas, Alex Hedin, …, Verena Siewers, Jens Nielsen, Florian David
- ACS Synth Biol, 10.1021/acssynbio.9b00258
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
- Hongzhong Lu, Feiran Li, Benjamín J Sánchez, …, Nikolaus Sonnenschein, Eduard J Kerkhoven, Jens Nielsen
- Nat Commun, 10.1038/s41467-019-11581-3
SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework
- Benjamín J Sánchez, Feiran Li, Eduard J Kerkhoven, Jens Nielsen
- None, 10.1186/s12918-018-0673-8
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
- Hao Wang, Simonas Marcišauskas, Benjamín J Sánchez, …, Rasmus Agren, Jens Nielsen, Eduard J Kerkhoven
- PLoS Comput Biol, 10.1371/journal.pcbi.1006541
Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast
- Petri-Jaan Lahtvee, Benjamín J Sánchez, Agata Smialowska, …, Ibrahim E Elsemman, Francesco Gatto, Jens Nielsen
- Cell Syst, 10.1016/j.cels.2017.03.003