Academic lineage
- Jens Nielsen - PhD student
HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer
- Le Yuan, Hongzhong Lu, Feiran Li, …, Feiran Li, Jens Nielsen, Eduard J Kerkhoven
- Brief Bioinform, 10.1093/bib/bbad035
Filling gaps in metabolism using hypothetical reactions
- Feiran Li, Feiran Li, Feiran Li, Feiran Li
- Proc Natl Acad Sci U S A, 10.1073/pnas.2217400119
GotEnzymes: an extensive database of enzyme parameter predictions
- Feiran Li, Yu Chen, Mihail Anton, …, Yu Chen, Mihail Anton, Jens Nielsen
- Nucleic Acids Res, 10.1093/nar/gkac831
Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints
- Feiran Li, Yu Chen, Qi Qi, …, Amir Feizi, Eduard J Kerkhoven, Jens Nielsen
- Nat Commun, 10.1038/s41467-022-30689-7
Genome-scale modeling of yeast metabolism: retrospectives and perspectives
- Yu Chen, Feiran Li, Jens Nielsen
- FEMS Yeast Res, 10.1093/femsyr/foac003
Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection
- Hongzhong Lu, Feiran Li, Le Yuan, …, Boyang Ji, Eduard J Kerkhoven, Jens Nielsen
- Mol Syst Biol, 10.15252/msb.202110427
Yeast optimizes metal utilization based on metabolic network and enzyme kinetics
- Yu Chen, Feiran Li, Jiwei Mao, Yun Chen, Jens Nielsen
- Proc Natl Acad Sci U S A, 10.1073/pnas.2020154118
Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species
- Iván Domenzain, Feiran Li, Eduard J Kerkhoven, Verena Siewers
- FEMS Yeast Res, 10.1093/femsyr/foab002
Different Routes of Protein Folding Contribute to Improved Protein Production in Saccharomyces cerevisiae
- Qi Qi, Feiran Li, Rosemary Yu, …, Verena Siewers, Johannes Fuchs, Jens Nielsen
- mBio, 10.1128/mbio.02743-20
Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
- Hongzhong Lu, Feiran Li, BenjamÃn J Sánchez, …, Nikolaus Sonnenschein, Eduard J Kerkhoven, Jens Nielsen
- Nat Commun, 10.1038/s41467-020-19358-9
Systematic design and in vitro validation of novel one-carbon assimilation pathways
- Xue Yang, Qianqian Yuan, Hao Luo, …, Yonghong Yao, Hongwu Ma, Yanhe Ma
- Metab Eng, 10.1016/j.ymben.2019.09.001
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
- Hongzhong Lu, Feiran Li, BenjamÃn J Sánchez, …, Nikolaus Sonnenschein, Eduard J Kerkhoven, Jens Nielsen
- Nat Commun, 10.1038/s41467-019-11581-3
SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework
- BenjamÃn J Sánchez, Feiran Li, Eduard J Kerkhoven, Jens Nielsen
- None, 10.1186/s12918-018-0673-8
Genome-scale metabolic model analysis indicates low energy production efficiency in marine ammonia-oxidizing archaea
- Feiran Li, Wei Xie, Qianqian Yuan, …, Xueming Zhao, Zhiwen Wang, Hongwu Ma
- None, 10.1186/s13568-018-0635-y