QurvE: user-friendly software for the analysis of biological growth and fluorescence data
- Nicolas T Wirth, Jonathan Funk, Stefano Donati, …, Jonathan Funk, Stefano Donati, Pablo I Nikel
- Nat Protoc, 10.1038/s41596-023-00850-7
Core and auxiliary functions of one-carbon metabolism in Pseudomonas putida exposed by a systems-level analysis of transcriptional and physiological responses
- Justine Turlin, Òscar Puiggené, Stefano Donati, …, Stefano Donati, Nicolas T Wirth, Pablo I Nikel
- mSystems, 10.1128/msystems.00004-23
An automated workflow for multi-omics screening of microbial model organisms
- Stefano Donati, Matthias Mattanovich, Pernille Hjort, …, Tadas Jakočiūnas, Lars Keld Nielsen, Douglas McCloskey
- NPJ Syst Biol Appl, 10.1038/s41540-023-00277-6
A synthetic C2 auxotroph of Pseudomonas putida for evolutionary engineering of alternative sugar catabolic routes
- Nicolas T Wirth, Nicolás Gurdo, Nicolas Krink, …, Lorena Férnandez-Cabezón, Tune Wulff, Pablo I Nikel
- Metab Eng, 10.1016/j.ymben.2022.09.004
Homeostasis of the biosynthetic E. coli metabolome
- Dušica Radoš, Stefano Donati, Martin Lempp, Johanna Rapp, Hannes Link
- None, 10.1016/j.isci.2022.104503
Engineering Yeast Yarrowia lipolytica for Methanol Assimilation
- Guokun Wang, Mattis Olofsson-Dolk, Frederik Gleerup Hansson, …, Jian Cheng, Jonathan Dahlin, Irina Borodina
- ACS Synth Biol, 10.1021/acssynbio.1c00464
Metabolome and proteome analyses reveal transcriptional misregulation in glycolysis of engineered E. coli
- Chun-Ying Wang, Martin Lempp, Niklas Farke, Stefano Donati, Timo Glatter, Hannes Link
- Nat Commun, 10.1038/s41467-021-25142-0
Multi-omics Analysis of CRISPRi-Knockdowns Identifies Mechanisms that Buffer Decreases of Enzymes in E. coli Metabolism
- Stefano Donati, Michelle Kuntz, Vanessa Pahl, …, Lennart Randau, Chun-Ying Wang, Hannes Link
- Cell Syst, 10.1016/j.cels.2020.10.011
In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions
- Linde F C Kampers, Ruben G A van Heck, Stefano Donati, …, Maria Suarez-Diez, Pablo I Nikel, Vitor A P Martins Dos Santos
- Microb Cell Fact, 10.1186/s12934-019-1227-5
Crosstalk between transcription and metabolism: how much enzyme is enough for a cell?
- Stefano Donati, Timur Sander, Hannes Link
- None, 10.1002/wsbm.1396
Evolution of p53 transactivation specificity through the lens of a yeast-based functional assay
- Mattia Lion, Ivan Raimondi, Stefano Donati, Olivier Jousson, Yari Ciribilli, Alberto Inga
- PLoS One, 10.1371/journal.pone.0116177