Systems Analysis of Highly Multiplexed CRISPR-Base Editing in Streptomycetes
- Christopher M Whitford, Tetiana Gren, Emilia Palazzotto, …, Sang Yup Lee, Yaojun Tong, Tilmann Weber
- ACS Synth Biol, 10.1021/acssynbio.3c00188
Properties of Multidrug-Resistant Mutants Derived from Heterologous Expression Chassis Strain Streptomyces albidoflavus J1074
- Borys Dolya, Olena Hryhorieva, Khrystyna Sorochynska, …, Andriy Luzhetskyy, Victor Fedorenko, Bohdan Ostash
- None, 10.3390/microorganisms11051176
UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis
- Eftychia E Kontou, Axel Walter, Oliver Alka, …, Matin Nuhamunada, Oliver Kohlbacher, Tilmann Weber
- None, 10.1186/s13321-023-00724-w
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
- Kai Blin, Simon Shaw, Hannah E Augustijn, …, Gilles P van Wezel, Marnix H Medema, Tilmann Weber
- Nucleic Acids Res, 10.1093/nar/gkad344
Identification and heterologous expression of the globomycin biosynthetic gene cluster
- Daniel Oves-Costales, Tetiana Gren, Eva Baggesgaard Sterndorff, …, Fernando Reyes, Olga Genilloud, Tilmann Weber
- None, 10.1016/j.synbio.2023.02.001
High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917
- Max van ‘t Hof, Omkar S Mohite, Jonathan M Monk, …, Tilmann Weber, Bernhard O Palsson, Morten O A Sommer
- BMC Bioinformatics, 10.1186/s12859-022-05108-9
Extraction and Oxford Nanopore sequencing of genomic DNA from filamentous Actinobacteria
- Maria Alvarez-Arevalo, Eva Baggesgaard Sterndorff, David Faurdal, …, Oliwia Vuksanovic, Subhasish Saha, Tilmann Weber
- STAR Protoc, 10.1016/j.xpro.2022.101955
Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem
- Roberto SĂĄnchez-Navarro, Matin Nuhamunada, Omkar S Mohite, …, Per H Nielsen, Tilmann Weber, Caitlin M Singleton
- mSystems, 10.1128/msystems.00632-22
MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters
- Barbara R Terlouw, Kai Blin, Jorge C Navarro-Muñoz, …, Roger G Linington, Tilmann Weber, Marnix H Medema
- Nucleic Acids Res, 10.1093/nar/gkac1049
Identification of the Biosynthetic Gene Cluster for Pyracrimycin A, an Antibiotic Produced by Streptomyces sp
- Julie B Nielsen, Tetiana Gren, Omkar S Mohite, …, Tilmann Weber, Charlotte H Gotfredsen, Pep Charusanti
- ACS Chem Biol, 10.1021/acschembio.2c00480
Pangenome analysis of Enterobacteria reveals richness of secondary metabolite gene clusters and their associated gene sets
- Omkar S Mohite, Colton J Lloyd, Jonathan M Monk, Tilmann Weber, Bernhard O Palsson
- None, 10.1016/j.synbio.2022.04.011