Bridging the gap between mechanistic biological models and machine learning surrogates
- Ioana M Gherman, Zahraa S Abdallah, Wei Pang, …, Thomas E Gorochowski, Claire S Grierson, Lucia Marucci
- PLoS Comput Biol, 10.1371/journal.pcbi.1010988
Advanced medical micro-robotics for early diagnosis and therapeutic interventions
- Dandan Zhang, Thomas E Gorochowski, Lucia Marucci, …, Bing Li, Sabine Hauert, Eric Yeatman
- None, 10.3389/frobt.2022.1086043
Towards the fully automated monitoring of ecological communities
- Marc Besson, Jamie Alison, Kim Bjerge, …, Tommaso Jucker, Hjalte M R Mann, Christopher F Clements
- Ecol Lett, 10.1111/ele.14123
Design and Assembly of Multilevel Transcriptional and Translational Regulators for Stringent Control of Gene Expression
- F Veronica Greco, Thea Irvine, Claire S Grierson, Thomas E Gorochowski
- Methods Mol Biol, 10.1007/978-1-0716-2421-0_6
Massively parallel characterization of engineered transcript isoforms using direct RNA sequencing
- Matthew J Tarnowski, Thomas E Gorochowski
- Nat Commun, 10.1038/s41467-022-28074-5
paraSBOLv: a foundation for standard-compliant genetic design visualization tools
- Charlie J Clark, James Scott-Brown, Thomas E Gorochowski
- None, 10.1093/synbio/ysab022
Specifications of standards in systems and synthetic biology: status and developments in 2021
- Falk Schreiber, Padraig Gleeson, Martin Golebiewski, …, David P Nickerson, Björn Sommer, Dagmar Waltemath
- J Integr Bioinform, 10.1515/jib-2021-0026
Efficient multiplexed gene regulation in Saccharomyces cerevisiae using dCas12a
- Klaudia Ciurkot, Thomas E Gorochowski, Johannes A Roubos, René Verwaal
- Nucleic Acids Res, 10.1093/nar/gkab529
Towards an engineering theory of evolution
- Simeon D Castle, Claire S Grierson, Thomas E Gorochowski
- Nat Commun, 10.1038/s41467-021-23573-3
Cheetah: A Computational Toolkit for Cybergenetic Control
- Elisa Pedone, Irene de Cesare, Criseida G Zamora-Chimal, …, Mario di Bernardo, Thomas E Gorochowski, Lucia Marucci
- ACS Synth Biol, 10.1021/acssynbio.0c00463
Characterizing Genetic Parts and Devices Using RNA Sequencing
- Deepti Vipin, Zoya Ignatova, Thomas E Gorochowski
- Methods Mol Biol, 10.1007/978-1-0716-1032-9_8
Advances in engineering CRISPR-Cas9 as a molecular Swiss Army knife
- Grace A Meaker, Emma J Hair, Thomas E Gorochowski
- None, 10.1093/synbio/ysaa021
Sequencing enabling design and learning in synthetic biology
- Pierre-Aurélien Gilliot, Thomas E Gorochowski
- Curr Opin Chem Biol, 10.1016/j.cbpa.2020.06.002
Tunable genetic devices through simultaneous control of transcription and translation
- Vittorio Bartoli, Grace A Meaker, Mario di Bernardo, Thomas E Gorochowski
- Nat Commun, 10.1038/s41467-020-15653-7
Pathways to cellular supremacy in biocomputing
- Lewis Grozinger, Martyn Amos, Thomas E Gorochowski, …, Paolo Zuliani, Huseyin Tas, Angel Goñi-Moreno
- Nat Commun, 10.1038/s41467-019-13232-z
CRISPR/Cas12a Multiplex Genome Editing of Saccharomyces cerevisiae and the Creation of Yeast Pixel Art
- Klaudia Ciurkot, Brenda Vonk, Thomas E Gorochowski, Johannes A Roubos, René Verwaal
- J Vis Exp, 10.3791/59350
Absolute quantification of translational regulation and burden using combined sequencing approaches
- Thomas E Gorochowski, Irina Chelysheva, Mette Eriksen, Priyanka Nair, Steen Pedersen, Zoya Ignatova
- Mol Syst Biol, 10.15252/msb.20188719
Designing efficient translation
- Thomas E Gorochowski, Tom Ellis
- Nat Biotechnol, 10.1038/nbt.4257
Automated Visualization of Genetic Designs Using DNAplotlib
- Vittorio Bartoli, Daniel O R Dixon, Thomas E Gorochowski
- Methods Mol Biol, 10.1007/978-1-4939-7795-6_22
Organization of feed-forward loop motifs reveals architectural principles in natural and engineered networks
- Thomas E Gorochowski, Claire S Grierson, Mario di Bernardo
- Sci Adv, 10.1126/sciadv.aap9751
A standard-enabled workflow for synthetic biology
- Chris J Myers, Jacob Beal, Thomas E Gorochowski, …, Anil Wipat, Michael Zhang, Zach Zundel
- Biochem Soc Trans, 10.1042/bst20160347
Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration
- Lauren B A Woodruff, Thomas E Gorochowski, Nicholas Roehner, …, D Benjamin Gordon, Robert Nicol, Christopher A Voigt
- Nucleic Acids Res, 10.1093/nar/gkx032