Academic lineage
More than bad luck: Cancer and aging are linked to replication-driven changes to the epigenome
- Christopher J Minteer, Kyra Thrush, John Gonzalez, …, Kenneth Beckman, Mark Gerstein, Morgan E Levine
- Sci Adv, 10.1126/sciadv.adf4163
Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes
- Shaoke Lou, Mingjun Yang, Tianxiao Li, …, Hannah Cevasco, Yucheng T Yang, Mark Gerstein
- PLoS Comput Biol, 10.1371/journal.pcbi.1011222
Minor intron splicing is critical for survival of lethal prostate cancer
- Anke Augspach, Kyle D Drake, Luca Roma, …, Salvatore Piscuoglio, Rahul N Kanadia, Mark A Rubin
- Mol Cell, 10.1016/j.molcel.2023.05.017
The association between evening social media use and delayed sleep may be causal: Suggestive evidence from 120 million Reddit timestamps
- William U Meyerson, Sarah K Fineberg, Fernanda C Andrade, …, Philip Corlett, Mark B Gerstein, Rick H Hoyle
- Sleep Med, 10.1016/j.sleep.2023.04.021
Genetic determination of regional connectivity in modelling the spread of COVID-19 outbreak for more efficient mitigation strategies
- Leonidas Salichos, Jonathan Warrell, Hannah Cevasco, …, Hannah Cevasco, Alvin Chung, Mark Gerstein
- Sci Rep, 10.1038/s41598-023-34959-2
exRNA-eCLIP intersection analysis reveals a map of extracellular RNA binding proteins and associated RNAs across major human biofluids and carriers
- Emily L LaPlante, Alessandra Stürchler, Robert Fullem, …, Eric Van Nostrand, Bogdan Mateescu, Aleksandar Milosavljevic
- None, 10.1016/j.xgen.2023.100303
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
- Joel Rozowsky, Jiahao Gao, Beatrice Borsari, …, Roderic Guigó, Thomas R Gingeras, Mark Gerstein
- Cell, 10.1016/j.cell.2023.02.018
Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition
- Bernardo Rodriguez-Martin, Eva G Alvarez, Adrian Baez-Ortega, …, Kathleen H Burns, Peter J Campbell, Jose M C Tubio
- Nat Genet, 10.1038/s41588-023-01319-9
Unified views on variant impact across many diseases
- Sushant Kumar, Mark Gerstein, Sushant Kumar, …, Mark Gerstein, Sushant Kumar, Mark Gerstein
- Trends Genet, 10.1016/j.tig.2023.02.002
Privacy-preserving cancer type prediction with homomorphic encryption
- Esha Sarkar, Eduardo Chielle, Gamze Gursoy, …, Leo Chen, Mark Gerstein, Michail Maniatakos
- Sci Rep, 10.1038/s41598-023-28481-8
Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
- Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, …, Iñigo Martincorena, Jakob Skou Pedersen, Gad Getz
- Nature, 10.1038/s41586-022-05599-9
Binding peptide generation for MHC Class I proteins with deep reinforcement learning
- Ziqi Chen, Baoyi Zhang, Hongyu Guo, …, Xia Ning, Chao Cheng, Martin Renqiang Min
- Bioinformatics, 10.1093/bioinformatics/btad055
