Characterization of a novel polyextremotolerant fungus, Exophiala viscosa, with insights into its melanin regulation and ecological niche
- Erin C Carr, Quin Barton, Sarah Grambo, …, Igor V Grigoriev, Wayne R Riekhof, Steven D Harris
- G3 (Bethesda), 10.1093/g3journal/jkad110
Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes
- Kristian Barrett, Cameron J Hunt, Lene Lange, …, Lene Lange, Igor V Grigoriev, Anne S Meyer
- Nucleic Acids Res, 10.1093/nar/gkad385
The Amylolytic Regulator AmyR of Aspergillus niger Is Involved in Sucrose and Inulin Utilization in a Culture-Condition-Dependent Manner
- Roland S Kun, Sonia Salazar-Cerezo, Mao Peng, …, Igor V Grigoriev, Ronald P de Vries, Sandra Garrigues
- None, 10.3390/jof9040438
An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi
- Hayat Hage, Julie Couillaud, Asaf Salamov, …, Igor Grigoriev, Gilles Iacazio, Marie-NoĂ«lle Rosso
- Microb Genom, 10.1099/mgen.0.000990
Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi
- Yi-Hong Ke, Sara Branco, Anna L Bazzicalupo, …, Kerrie Barry, Igor Grigoriev, Rytas Vilgalys
- Genetics, 10.1093/genetics/iyad069
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi
- Yogesh K Gupta, Francismar C Marcelino-GuimarĂŁes, CĂ©cile Lorrain, …, Gabriel Scalliet, SĂ©bastien Duplessis, H Peter van Esse
- Nat Commun, 10.1038/s41467-023-37551-4
Acquisition of host-derived carbon in biomass of the ectomycorrhizal fungus Pisolithus microcarpus is correlated to fungal carbon demand and plant defences
- Emiko K Stuart, Vasanth Singan, Mojgan Amirebrahimi, …, Ian C Anderson, Jonathan M Plett, Krista L Plett
- FEMS Microbiol Ecol, 10.1093/femsec/fiad037
Conservation and Expansion of Transcriptional Factor Repertoire in the Fusarium oxysporum Species Complex
- Houlin Yu, He Yang, Sajeet Haridas, …, Yong Zhang, Igor V Grigoriev, Li-Jun Ma
- None, 10.3390/jof9030359
Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors
- Yan Wang, Ying Chang, Jericho Ortañez, …, Igor V Grigoriev, Joseph W Spatafora, Jason E Stajich
- Genome Biol Evol, 10.1093/gbe/evad046
Lignin deconstruction by anaerobic fungi
- Thomas S Lankiewicz, Hemant Choudhary, Yu Gao, …, Blake A Simmons, Steven W Singer, Michelle A O’Malley
- Nat Microbiol, 10.1038/s41564-023-01336-8
T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
- Sajeet Haridas, Jennifer B GonzĂĄlez, Robert Riley, …, Igor V Grigoriev, Scott E Baker, B Gillian Turgeon
- mBio, 10.1128/mbio.00261-23
Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms
- Anthony Duncan, Kerrie Barry, Chris Daum, …, Richard M Leggett, Vincent Moulton, Thomas Mock
- None, 10.1016/j.dib.2023.108990
A global phylogenomic analysis of the shiitake genus Lentinula
- Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, …, Kazuhisa Terashima, Igor V Grigoriev, David Hibbett
- Proc Natl Acad Sci U S A, 10.1073/pnas.2214076120
A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen
- Alice Feurtey, CĂ©cile Lorrain, Megan C McDonald, …, Gert H J Kema, Bruce A McDonald, Daniel Croll
- Nat Commun, 10.1038/s41467-023-36674-y
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus
- Jonathan M Plett, Shingo Miyauchi, Emmanuelle Morin, …, Francis Martin, Ian C Anderson, Annegret Kohler
- Mol Biol Evol, 10.1093/molbev/msad045
DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus
- Julien Vigneaud, Annegret Kohler, Mamadou Dia Sow, …, Steven H Strauss, Claire Veneault-Fourrey, StĂ©phane Maury
- New Phytol, 10.1111/nph.18734
The transcriptional activator ClrB is crucial for the degradation of soybean hulls and guar gum in Aspergillus niger
- Roland S Kun, Sandra Garrigues, Mao Peng, …, Sravanthi Tejomurthula, Igor V Grigoriev, Ronald P de Vries
- Fungal Genet Biol, 10.1016/j.fgb.2023.103781
Stepwise recombination suppression around the mating-type locus in an ascomycete fungus with self-fertile spores
- Nina Vittorelli, Ricardo C RodrĂguez de la Vega, Alodie Snirc, …, Philippe Silar, Tatiana Giraud, Fanny E Hartmann
- PLoS Genet, 10.1371/journal.pgen.1010347
Functional genomics gives new insights into the ectomycorrhizal degradation of chitin
- François Maillard, Annegret Kohler, Emmanuelle Morin, …, Igor V Grigoriev, Francis M Martin, Marc BuĂ©e
- New Phytol, 10.1111/nph.18773
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
- Jiajia Li, Tania Chroumpi, Sandra Garrigues, …, Berend Snel, Mao Peng, Ronald P de Vries
- None, 10.3390/jof8121315
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae
- Richard G Dorrell, Alan Kuo, Zoltan FĂŒssy, …, Chris Bowler, Igor V Grigoriev, Connie Lovejoy
- Life Sci Alliance, 10.26508/lsa.202201833
High-quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water
- Domitille Jarrige, Sajeet Haridas, Claudine Bleykasten-Grosshans, …, Igor V Grigoriev, Pierre Amato, Françoise Bringel
- G3 (Bethesda), 10.1093/g3journal/jkac282
Multiomics in the central Arctic Ocean for benchmarking biodiversity change
- Thomas Mock, William Boulton, John-Paul Balmonte, …, Richard M Leggett, Vincent Moulton, Katja Metfies
- PLoS Biol, 10.1371/journal.pbio.3001835
Expansion of the global RNA virome reveals diverse clades of bacteriophages
- Uri Neri, Yuri I Wolf, Simon Roux, …, Nikos C Kyrpides, Eugene V Koonin, Uri Gophna
- Cell, 10.1016/j.cell.2022.08.023
Diploid-dominant life cycles characterize the early evolution of Fungi
- Kevin R Amses, D Rabern Simmons, Joyce E Longcore, …, Joseph W Spatafora, Jason E Stajich, Timothy Y James
- Proc Natl Acad Sci U S A, 10.1073/pnas.2116841119
Wildfire-dependent changes in soil microbiome diversity and function
- Amelia R Nelson, Adrienne B Narrowe, Charles C Rhoades, …, Asaf Salamov, Thomas Borch, Michael J Wilkins
- Nat Microbiol, 10.1038/s41564-022-01203-y
Proteome of the Wood Decay Fungus Fomitopsis pinicola Is Altered by Substrate
- Grzegorz Sabat, Steven Ahrendt, Baojun Wu, …, David S Hibbett, Jennifer Bhatnagar, Daniel Cullen
- None, 10.1128/mra.00586-22
Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes
- Jingcheng Zhang, Nan Shen, Chuang Li, …, Man Kit Cheung, Yinbing Bian, Yang Xiao
- J Adv Res, 10.1016/j.jare.2021.09.008
Annotation survey and life cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
- ClĂ©mentine Louet, Carla Blot, Ekaterina Shelest, …, Igor V Grigoriev, Pascal Frey, Sebastien Duplessis
- Fungal Genet Biol, 10.1016/j.fgb.2022.103698
The ectomycorrhizal fungus Pisolithus microcarpus encodes a microRNA involved in cross-kingdom gene silencing during symbiosis
- Johanna Wong-Bajracharya, Vasanth R Singan, Remo Monti, …, Francis M Martin, Ian C Anderson, Jonathan M Plett
- Proc Natl Acad Sci U S A, 10.1073/pnas.2103527119
Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme
- Marco Alexandre Guerreiro, Steven Ahrendt, Jasmyn Pangilinan, …, Igor V Grigoriev, Dominik Begerow, Minou Nowrousian
- G3 (Bethesda), 10.1093/g3journal/jkab398
Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica
- Felix Heeger, Elizabeth C Bourne, Christian Wurzbacher, …, Igor V Grigoriev, Dietmar Schlosser, Michael T Monaghan
- None, 10.3390/jof7100854
The Melampsora americana Population on Salix purpurea in the Great Lakes Region Is Highly Diverse with a Contributory Influence of Clonality
- Chase R Crowell, Dustin G Wilkerson, Mariami Beckauri, …, Igor V Grigoriev, Lawrence B Smart, Christine D Smart
- Phytopathology, 10.1094/phyto-05-21-0201-r
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole
- Kara Martin, Katrin Schmidt, Andrew Toseland, …, Richard M Leggett, Vincent Moulton, Thomas Mock
- Nat Commun, 10.1038/s41467-021-25646-9
Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship
- Candice L Swift, Katherine B Louie, Benjamin P Bowen, …, Igor V Grigoriev, Trent R Northen, Michelle A O’Malley
- mBio, 10.1128/mbio.01442-21
Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes
- Maria Paula Rueda-Mejia, Lukas NĂ€geli, Stefanie Lutz, …, Igor V Grigoriev, Christian H Ahrens, Florian M Freimoser
- None, 10.15698/mic2021.08.757
Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom
- Aaron Oliver, Sheila Podell, Agnieszka Pinowska, …, Andrew E Allen, David Hazlebeck, Eric E Allen
- Sci Rep, 10.1038/s41598-021-95106-3
Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus
- Rachel A Koch, Gyeong Mee Yoon, Uma K Aryal, …, Igor V Grigoriev, Joshua R Herr, M Catherine Aime
- Curr Biol, 10.1016/j.cub.2021.06.033
CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
- Mao Peng, Claire Khosravi, Ronnie J M Lubbers, …, Igor V Grigoriev, Miia R MĂ€kelĂ€, Ronald P de Vries
- None, 10.1016/j.tcsw.2021.100050
Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee
- Emmanuelle Morin, Claude Murat, Nicolas Cichocki, …, Jianping Xu, Igor V Grigoriev, Francis M Martin
- None, 10.1128/mra.00799-20
IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains
- Masayuki Kamei, Abigail J Ameri, Aileen R Ferraro, …, Robert J Schmitz, Yi Liu, Zachary A Lewis
- Proc Natl Acad Sci U S A, 10.1073/pnas.2010003118
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
- Lotus A Lofgren, Nhu H Nguyen, Rytas Vilgalys, …, Igor V Grigoriev, Jason E Stajich, Peter G Kennedy
- New Phytol, 10.1111/nph.17160
Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics
- Natalie Vandepol, Julian Liber, Alessandro DesirĂČ, …, Kerry O’Donnell, Jason E Stajich, Gregory Bonito
- None, 10.1007/s13225-020-00455-5
Erratum for Myers et al., “Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses”
- J M Myers, A E Bonds, R A Clemons, …, A Gryganskyi, I V Grigoriev, T Y James
- mBio, 10.1128/mbio.02851-20
Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity
- Francisco J Ruiz-Dueñas, JosĂ© M Barrasa, Marisol SĂĄnchez-GarcĂa, …, Bernard Henrissat, David Hibbett, Angel T MartĂnez
- Mol Biol Evol, 10.1093/molbev/msaa301
Author Correction: Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions
- Abbot O Oghenekaro, Andriy Kovalchuk, Tommaso Raffaello, …, Igor V Grigoriev, Francis Martin, Fred O Asiegbu
- Sci Rep, 10.1038/s41598-020-74783-6
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
- Shingo Miyauchi, EnikĆ Kiss, Alan Kuo, …, David Hibbett, LĂĄszlĂł G Nagy, Francis M Martin
- Nat Commun, 10.1038/s41467-020-18795-w
Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes
- Andrei S Steindorff, Akiko Carver, Sara Calhoun, …, Vivian Ng, Thomas D Bruns, Igor V Grigoriev
- Environ Microbiol, 10.1111/1462-2920.15273
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus
- Shingo Miyauchi, Hayat Hage, Elodie Drula, …, Eric Record, Igor V Grigoriev, Marie-NoĂ«lle Rosso
- DNA Res, 10.1093/dnares/dsaa011
Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose
- Jolanda M van Munster, Paul Daly, Martin J Blythe, …, Gregory A Tucker, Blake A Simmons, David B Archer
- None, 10.1186/s13068-020-01702-2