Video highlight
Gene-by-environment interactions influence the fitness cost of gene copy-number variation in yeast
- DeElegant Robinson, Elena Vanacloig-Pedros, Ruoyi Cai, …, Michael Place, James Hose, Audrey P Gasch
- None, 10.1101/2023.05.11.540375
Comparative chemical genomic profiling across plant-based hydrolysate toxins reveals widespread antagonism in fitness contributions
- Elena Vanacloig-Pedros, Kaitlin J Fisher, Lisa Liu, …, Chris Todd Hittinger, Trey K Sato, Audrey P Gasch
- FEMS Yeast Res, 10.1093/femsyr/foac036
Comparative functional genomics identifies an iron-limited bottleneck in a Saccharomyces cerevisiae strain with a cytosolic-localized isobutanol pathway
- Francesca V Gambacorta, Ellen R Wagner, Tyler B Jacobson, …, Chris Todd Hittinger, Trey K Sato, Brian F Pfleger
- None, 10.1016/j.synbio.2022.02.007
Crabtree/Warburg-like aerobic xylose fermentation by engineered Saccharomyces cerevisiae
- Sae-Byuk Lee, Mary Tremaine, Michael Place, …, Audrey P Gasch, Chris Todd Hittinger, Trey K Sato
- Metab Eng, 10.1016/j.ymben.2021.09.008
Genetic variation in aneuploidy prevalence and tolerance across Saccharomyces cerevisiae lineages
- Eduardo F C Scopel, James Hose, Douda Bensasson, Audrey P Gasch
- Genetics, 10.1093/genetics/iyab015
Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses
- Matthew E MacGilvray, Evgenia Shishkova, Michael Place, Ellen R Wagner, Joshua J Coon, Audrey P Gasch
- J Proteome Res, 10.1021/acs.jproteome.0c00253
Postponing the IV International Symposium on Fungal Stress (ISFUS) and the XIII International Fungal Biology Conference (IFBC) due to COVID-19
- Drauzio E N Rangel, Jesús Aguirre, Alene Alder-Rangel
- Fungal Biol, 10.1016/j.funbio.2020.04.004
Context-Specific Nested Effects Models
- Yuriy Sverchkov, Yi-Hsuan Ho, Audrey Gasch, Mark Craven
- J Comput Biol, 10.1089/cmb.2019.0459
The genetic basis of aneuploidy tolerance in wild yeast
- James Hose, Leah E Escalante, Katie J Clowers, …, Joshua J Coon, Evgenia Shishkova, Audrey P Gasch
- Elife, 10.7554/elife.52063
PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production
- Ellen R Wagner, Kevin S Myers, Nicholas M Riley, Joshua J Coon, Audrey P Gasch
- PLoS One, 10.1371/journal.pone.0212389
Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast
- Kevin S Myers, Nicholas M Riley, Matthew E MacGilvray, …, Justin Heilberger, Joshua J Coon, Audrey P Gasch
- PLoS Genet, 10.1371/journal.pgen.1008037
Noncanonical CTD kinases regulate RNA polymerase II in a gene-class-specific manner
- Corey M Nemec, Amit K Singh, Asfa Ali, …, Md Sohail Akhtar, Dirk Eick, Aseem Z Ansari
- Nat Chem Biol, 10.1038/s41589-018-0194-1
Independent Mechanisms for Acquired Salt Tolerance versus Growth Resumption Induced by Mild Ethanol Pretreatment in Saccharomyces cerevisiae
- Elizabeth A McDaniel, Tara N Stuecker, Manasa Veluvolu, Audrey P Gasch, Jeffrey A Lewis
- mSphere, 10.1128/msphere.00574-18
Genotype-by-Environment-by-Environment Interactions in the Saccharomyces cerevisiae Transcriptomic Response to Alcohols and Anaerobiosis
- Maria Sardi, Molly Krause, Justin Heilberger, Audrey P Gasch
- G3 (Bethesda), 10.1534/g3.118.200677
Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress
- Yi-Hsuan Ho, Evgenia Shishkova, James Hose, Joshua J Coon, Audrey P Gasch
- Curr Biol, 10.1016/j.cub.2018.06.044
Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response
- Matthew E MacGilvray, Evgenia Shishkova, Deborah Chasman, …, Anthony Gitter, Joshua J Coon, Audrey P Gasch
- PLoS Comput Biol, 10.1371/journal.pcbi.1006088
Genetic background effects in quantitative genetics: gene-by-system interactions
- Maria Sardi, Audrey P Gasch
- Curr Genet, 10.1007/s00294-018-0835-7
Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance
- Maria Sardi, Vaishnavi Paithane, Michael Place, …, James Hose, Dana J Wohlbach, Audrey P Gasch
- PLoS Genet, 10.1371/journal.pgen.1007217
Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress
- Audrey P Gasch, Feiqiao Brian Yu, James Hose, …, Christina Kendziorski, Stephen R Quake, Megan N McClean
- PLoS Biol, 10.1371/journal.pbio.2004050
Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families
- Anthony J Cesnik, Michael R Shortreed, Leah V Schaffer, …, Yunxiang Dai, Audrey P Gasch, Lloyd M Smith
- J Proteome Res, 10.1021/acs.jproteome.7b00685
The Substrates of Nonsense-Mediated mRNA Decay in Caenorhabditis elegans
- Virginia S Muir, Audrey P Gasch, Philip Anderson
- G3 (Bethesda), 10.1534/g3.117.300254
