Podcast episodes
Computational interpretation of human genetic variation
- Yana Bromberg, Predrag Radivojac
- Hum Genet, 10.1007/s00439-022-02483-4
Inferring Potential Cancer Driving Synonymous Variants
- Zishuo Zeng, Yana Bromberg
- Genes (Basel), 10.3390/genes13050778
Deep learning of a bacterial and archaeal universal language of life enables transfer learning and illuminates microbial dark matter
- A Hoarfrost, A Aptekmann, G Farfañuk, Y Bromberg
- Nat Commun, 10.1038/s41467-022-30070-8
Predicting embryonic aneuploidy rate in IVF patients using whole-exome sequencing
- Siqi Sun, Maximilian Miller, Yanran Wang, …, Yana Bromberg, Karen Schindler, Jinchuan Xing
- Hum Genet, 10.1007/s00439-022-02450-z
Quantifying structural relationships of metal-binding sites suggests origins of biological electron transfer
- Yana Bromberg, Ariel A Aptekmann, Yannick Mahlich, …, Vikas Nanda, Diego U Ferreiro, Paul G Falkowski
- Sci Adv, 10.1126/sciadv.abj3984
PredictProtein – Predicting Protein Structure and Function for 29 Years
- Michael Bernhofer, Christian Dallago, Tim Karl, …, Martin Steinegger, Reinhard Schneider, Burkhard Rost
- Nucleic Acids Res, 10.1093/nar/gkab354
Low Diversity of Human Variation Despite Mostly Mild Functional Impact of De Novo Variants
- Yannick Mahlich, Maximillian Miller, Zishuo Zeng, Yana Bromberg
- None, 10.3389/fmolb.2021.635382
Impact of vitamin A transport and storage on intestinal retinoid homeostasis and functions
- Maryam Honarbakhsh, Aaron Ericsson, Guo Zhong, …, Michael L Chikindas, Paul Breslin, Loredana Quadro
- J Lipid Res, 10.1016/j.jlr.2021.100046
Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds
- Chengsheng Zhu, Maximilian Miller, Nicholas Lusskin, …, Timothy Vogel, Catherine Larose, Yana Bromberg
- Microbiologyopen, 10.1002/mbo3.1100
Amino acid encoding for deep learning applications
- Hesham ElAbd, Yana Bromberg, Adrienne Hoarfrost, Tobias Lenz, Andre Franke, Mareike Wendorff
- BMC Bioinformatics, 10.1186/s12859-020-03546-x
funtrp: identifying protein positions for variation driven functional tuning
- Maximilian Miller, Daniel Vitale, Peter C Kahn, Burkhard Rost, Yana Bromberg
- Nucleic Acids Res, 10.1093/nar/gkz818