Longitudinal transkingdom gut microbial approach towards decompensation in outpatients with cirrhosis
- Marcela Peña-Rodriguez, Alex La Reau, Wendy Phillips, …, Puneet Puri, Hannah Lee, Patrick M Gillevet
- Gut, 10.1136/gutjnl-2022-328403
Multi-Omics Analyses Show Disease, Diet, and Transcriptome Interactions With the Virome
- Kathie A Mihindukulasuriya, Ruben A T Mars, Abigail J Johnson, …, Dan Knights, Scott A Handley, Purna C Kashyap
- Gastroenterology, 10.1053/j.gastro.2021.06.077
Wild primate microbiomes prevent weight gain in germ-free mice
- Dimitrios N Sidiropoulos, Gabriel A Al-Ghalith, Robin R Shields-Cutler, …, Yibo Xian, Amanda E Ramer-Tait, Jonathan B Clayton
- None, 10.1186/s42523-020-00033-9
Metagenomic Information Recovery from Human Stool Samples Is Influenced by Sequencing Depth and Profiling Method
- Tasha M Santiago-Rodriguez, Aaron Garoutte, Emmase Adams, …, Dan Knights, Joseph F Petrosino, Emily B Hollister
- Genes (Basel), 10.3390/genes11111380
Antibiotics and Host-Tailored Probiotics Similarly Modulate Effects on the Developing Avian Microbiome, Mycobiome, and Host Gene Expression
- Tonya L Ward, Bonnie P Weber, Kristelle M Mendoza, …, Ryan Arsenault, Kent M Reed, Timothy J Johnson
- mBio, 10.1128/mbio.02171-19
US Immigration Westernizes the Human Gut Microbiome
- Pajau Vangay, Abigail J Johnson, Tonya L Ward, …, Purna C Kashyap, Kathleen A Culhane-Pera, Dan Knights
- Cell, 10.1016/j.cell.2018.10.029
Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model
- Jonathan B Clayton, Gabriel A Al-Ghalith, Ha Thang Long, …, Randy Singer, Dan Knights, Timothy J Johnson
- Sci Rep, 10.1038/s41598-018-29277-x
Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice
- Quentin Le Bastard, Tonya Ward, Dimitri Sidiropoulos, …, Michael J Sadowsky, Dan Knights, Emmanuel Montassier
- Sci Rep, 10.1038/s41598-018-24342-x
Development of the Human Mycobiome over the First Month of Life and across Body Sites
- Tonya L Ward, Maria Gloria Dominguez-Bello, Tim Heisel, Gabriel Al-Ghalith, Dan Knights, Cheryl A Gale
- mSystems, 10.1128/msystems.00140-17