Academic lineage
- Ines Thiele
- Bernhard Ø Palsson - Ph.D. student
The media composition as a crucial element in high-throughput metabolic network reconstruction
- Benedict Borer, Stefanía Magnúsdóttir, Benedict Borer, Stefanía Magnúsdóttir
- None, 10.1098/rsfs.2022.0070
Multi-country metabolic signature discovery for chicken health classification
- Joanna C Wolthuis, Stefanía Magnúsdóttir, Edwin Stigter, …, Arie Kies, Jeroen de Ridder, Saskia van Mil
- Metabolomics, 10.1007/s11306-023-01973-4
Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine
- Almut Heinken, Johannes Hertel, Geeta Acharya, …, Christopher S Henry, Ronan M T Fleming, Ines Thiele
- Nat Biotechnol, 10.1038/s41587-022-01628-0
Ablation of liver Fxr results in an increased colonic mucus barrier in mice
- Noortje Ijssennagger, Kristel S van Rooijen, Stefanía Magnúsdóttir, …, Yvonne Vercoulen, Folkert Kuipers, Saskia W C van Mil
- None, 10.1016/j.jhepr.2021.100344
DEMETER: efficient simultaneous curation of genome-scale reconstructions guided by experimental data and refined gene annotations
- Almut Heinken, Stefanía Magnúsdóttir, Ronan M T Fleming, …, Stefanía Magnúsdóttir, Ronan M T Fleming, Ines Thiele
- Bioinformatics, 10.1093/bioinformatics/btab622
MetaboShiny: interactive analysis and metabolite annotation of mass spectrometry-based metabolomics data
- Joanna C Wolthuis, Stefania Magnusdottir, Mia Pras-Raves, …, Boudewijn Burgering, Saskia van Mil, Jeroen de Ridder
- Metabolomics, 10.1007/s11306-020-01717-8
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
- Laurent Heirendt, Sylvain Arreckx, Thomas Pfau, …, Bernhard Ø Palsson, Ines Thiele, Ronan M T Fleming
- Nat Protoc, 10.1038/s41596-018-0098-2
The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities
- Federico Baldini, Almut Heinken, Laurent Heirendt, Stefania Magnusdottir, Ronan M T Fleming, Ines Thiele
- Bioinformatics, 10.1093/bioinformatics/bty941
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
- Alberto Noronha, Jennifer Modamio, Yohan Jarosz, …, Reinhard Schneider, Ronan M T Fleming, Ines Thiele
- Nucleic Acids Res, 10.1093/nar/gky992
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
- Stefanía Magnúsdóttir, Almut Heinken, Laura Kutt, …, Paul Wilmes, Ronan M T Fleming, Ines Thiele
- Nat Biotechnol, 10.1038/nbt.3703
Erratum to: Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires
- Eugen Bauer, Cedric Christian Laczny, Stefania Magnusdottir, Paul Wilmes, Ines Thiele
- Microbiome, 10.1186/s40168-016-0180-3