Academic lineage
The Mycobacterium tuberculosis protein O-phosphorylation landscape
- Andrew Frando, Vishant Boradia, Marina Gritsenko, …, Shuyi Ma, Jon M Jacobs, Christoph Grundner
- Nat Microbiol, 10.1038/s41564-022-01313-7
Early alveolar macrophage response and IL-1R-dependent T cell priming determine transmissibility of Mycobacterium tuberculosis strains
- Arianne Lovey, Sheetal Verma, Vaishnavi Kaipilyawar, …, David R Sherman, Jerrold J Ellner, Padmini Salgame
- Nat Commun, 10.1038/s41467-022-28506-2
Experimental and Computational Workflow for RNA Sequencing in Mycobacterium tuberculosis : From Total RNA to Differentially Expressed Genes
- Shuyi Ma, Richard M Jones, Natalie S Gleason, Jessica Farrow-Johnson, David R Sherman
- Methods Mol Biol, 10.1007/978-1-0716-1460-0_21
Transcriptional regulator-induced phenotype screen reveals drug potentiators in Mycobacterium tuberculosis
- Shuyi Ma, Robert Morrison, Samuel J Hobbs, …, Kyu Y Rhee, Tige R Rustad, David R Sherman
- Nat Microbiol, 10.1038/s41564-020-00810-x
Genetic Diversity in Mycobacterium tuberculosis Clinical Isolates and Resulting Outcomes of Tuberculosis Infection and Disease
- Julian S Peters, Nabila Ismail, Anzaan Dippenaar, …, David R Sherman, Robin M Warren, Bavesh D Kana
- Annu Rev Genet, 10.1146/annurev-genet-022820-085940
Spatial modeling of prostate cancer metabolic gene expression reveals extensive heterogeneity and selective vulnerabilities
- Yuliang Wang, Shuyi Ma, Walter L Ruzzo, Yuliang Wang, Shuyi Ma, Walter L Ruzzo
- Sci Rep, 10.1038/s41598-020-60384-w
Transcriptomic Signatures Predict Regulators of Drug Synergy and Clinical Regimen Efficacy against Tuberculosis
- Shuyi Ma, Suraj Jaipalli, Jonah Larkins-Ford, …, Bree B Aldridge, David R Sherman, Sriram Chandrasekaran
- mBio, 10.1128/mbio.02627-19
Phase variation in Mycobacterium tuberculosis glpK produces transiently heritable drug tolerance
- Hassan Safi, Pooja Gopal, Subramanya Lingaraju, …, David R Sherman, Thomas Dick, David Alland
- Proc Natl Acad Sci U S A, 10.1073/pnas.1907631116
Bacterial Factors That Predict Relapse after Tuberculosis Therapy
- Roberto Colangeli, Hannah Jedrey, Soyeon Kim, …, John L Johnson, William R Mac Kenzie, David Alland
- N Engl J Med, 10.1056/nejmoa1715849
Incipient and Subclinical Tuberculosis: a Clinical Review of Early Stages and Progression of Infection
- Paul K Drain, Kristina L Bajema, David Dowdy, …, Erin Meermeier, David M Lewinsohn, David R Sherman
- Clin Microbiol Rev, 10.1128/cmr.00021-18
Antigen Availability Shapes T Cell Differentiation and Function during Tuberculosis
- Albanus O Moguche, Munyaradzi Musvosvi, Adam Penn-Nicholson, …, Peter Andersen, Thomas J Scriba, Kevin B Urdahl
- Cell Host Microbe, 10.1016/j.chom.2017.05.012
Relation of concavity in the expiratory flow-volume loop to dynamic hyperinflation during exercise in COPD
- Janos Varga, Richard Casaburi, Shuyi Ma, …, David Hsia, Attila Somfay, Janos Porszasz
- Respir Physiol Neurobiol, 10.1016/j.resp.2016.08.005
Network analysis identifies Rv0324 and Rv0880 as regulators of bedaquiline tolerance in Mycobacterium tuberculosis
- Eliza J R Peterson, Shuyi Ma, David R Sherman, Nitin S Baliga
- Nat Microbiol, 10.1038/nmicrobiol.2016.78
A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis
- Serdar Turkarslan, Eliza J R Peterson, Tige R Rustad, …, Nathan D Price, David R Sherman, Nitin S Baliga
- Sci Data, 10.1038/sdata.2015.10