Academic lineage
- Bernhard Ø Palsson - Ph.D. student
Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes
- Erol S Kavvas, Christopher P Long, Anand Sastry, …, Jonathan M Monk, Adam M Feist, Bernhard O Palsson
- mSystems, 10.1128/msystems.00165-22
Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories
- Anaëlle Fait, Yara Seif, Kasper Mikkelsen, …, Jerry M Wells, Bernhard O Palsson, Hanne Ingmer
- Proc Natl Acad Sci U S A, 10.1073/pnas.2118262119
Mathematical models to study the biology of pathogens and the infectious diseases they cause
- Joao B Xavier, Jonathan M Monk, Saugat Poudel, …, Qinglong Wu, Tor Savidge, Michael R Yeaman
- None, 10.1016/j.isci.2022.104079
Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection
- Reo Yoo, Kevin Rychel, Saugat Poudel, …, Cameron Lamoureux, Bernhard O Palsson, Anand Sastry
- mSphere, 10.1128/msphere.00033-22
Optimal dimensionality selection for independent component analysis of transcriptomic data
- John Luke McConn, Cameron R Lamoureux, Saugat Poudel, Bernhard O Palsson, Anand V Sastry
- BMC Bioinformatics, 10.1186/s12859-021-04497-7
Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius
- Siddharth M Chauhan, Saugat Poudel, Kevin Rychel, …, Yuan Yuan, Bernhard O Palsson, Anand V Sastry
- None, 10.3389/fmicb.2021.753521
Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility
- Anand V Sastry, Nicholas Dillon, Amitesh Anand, …, Adam M Feist, Victor Nizet, Bernhard Palsson
- mSphere, 10.1128/msphere.00443-21
Independent component analysis recovers consistent regulatory signals from disparate datasets
- Anand V Sastry, Alyssa Hu, David Heckmann, Saugat Poudel, Erol Kavvas, Bernhard O Palsson
- PLoS Comput Biol, 10.1371/journal.pcbi.1008647
Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens
- Akanksha Rajput, Yara Seif, Kumari Sonal Choudhary, …, Saugat Poudel, Jonathan M Monk, Bernhard O Palsson
- mSystems, 10.1128/msystems.00981-20