Probe-based bacterial single-cell RNA sequencing predicts toxin regulation
- Ryan McNulty, Duluxan Sritharan, Seong Ho Pahng, …, Gerda Saxer, Sahand Hormoz, Adam Z Rosenthal
- Nat Microbiol, 10.1038/s41564-023-01348-4
An improved rhythmicity analysis method using Gaussian Processes detects cell-density dependent circadian oscillations in stem cells
- Shabnam Sahay, Shishir Adhikari, Sahand Hormoz, …, Shishir Adhikari, Sahand Hormoz, Shaon Chakrabarti
- None, 10.1101/2023.03.21.533651
Collective polymerase dynamics emerge from DNA supercoiling during transcription
- Stuart A Sevier, Sahand Hormoz, Stuart A Sevier, Sahand Hormoz, Stuart A Sevier, Sahand Hormoz
- Biophys J, 10.1016/j.bpj.2022.09.026
Paraxial mesoderm organoids model development of human somites
- Christoph Budjan, Shichen Liu, Adrian Ranga, Senjuti Gayen, Olivier Pourquié, Sahand Hormoz
- Elife, 10.7554/elife.68925
A novel deep learning-based 3D cell segmentation framework for future image-based disease detection
- Andong Wang, Qi Zhang, Yang Han, …, Kishore R Mosaliganti, Jacqueline C K Lam, Victor O K Li
- Sci Rep, 10.1038/s41598-021-04048-3
Transcriptional differences between JAK2-V617F and wild-type bone marrow cells in patients with myeloproliferative neoplasms
- Debra Van Egeren, Baransel Kamaz, Shichen Liu, …, Isidro Cortes-Ciriano, Ann Mullally, Sahand Hormoz
- Exp Hematol, 10.1016/j.exphem.2021.12.364
Integrating readout of somatic mutations in individual cells with single-cell transcriptional profiling
- Shichen Liu, Maximilian Nguyen, Sahand Hormoz
- STAR Protoc, 10.1016/j.xpro.2021.100673
Computing the Riemannian curvature of image patch and single-cell RNA sequencing data manifolds using extrinsic differential geometry
- Duluxan Sritharan, Shu Wang, Sahand Hormoz
- Proc Natl Acad Sci U S A, 10.1073/pnas.2100473118
Reconstructing the Lineage Histories and Differentiation Trajectories of Individual Cancer Cells in Myeloproliferative Neoplasms
- Debra Van Egeren, Javier Escabi, Maximilian Nguyen, …, Ann Mullally, Isidro Cortes-Ciriano, Sahand Hormoz
- Cell Stem Cell, 10.1016/j.stem.2021.02.001
An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells
- Sarah Bowling, Duluxan Sritharan, Fernando G Osorio, …, Stuart H Orkin, Sahand Hormoz, Fernando D Camargo
- Cell, 10.1016/j.cell.2020.06.018
Metabolic interactions between dynamic bacterial subpopulations
- Adam Z Rosenthal, Yutao Qi, Sahand Hormoz, Jin Park, Sophia Hsin-Jung Li, Michael B Elowitz
- Elife, 10.7554/elife.33099