Academic lineage
Bayesian inference of admixture graphs on Native American and Arctic populations
- Svend V Nielsen, Andrew H Vaughn, Kalle LeppĂ€lĂ€, …, Michael J Landis, Thomas Mailund, Rasmus Nielsen
- PLoS Genet, 10.1371/journal.pgen.1010410
The population genomic legacy of the second plague pandemic
- Shyam Gopalakrishnan, S Sunna EbenesersdĂłttir, Inge K C LundstrĂžm, …, KĂĄri StefĂĄnsson, Agnar Helgason, M Thomas P Gilbert
- Curr Biol, 10.1016/j.cub.2022.09.023
Estimating the relative proportions of SARS-CoV-2 haplotypes from wastewater samples
- Lenore Pipes, Zihao Chen, Svetlana Afanaseva, Rasmus Nielsen
- Cell Rep Methods, 10.1016/j.crmeth.2022.100313
Predicting Egg Passage Adaptations to Design Better Vaccines for the H3N2 Influenza Virus
- Yunsong Liu, Hui Chen, Wenyuan Duan, …, Rasmus Nielsen, Liang Ma, Weiwei Zhai
- Viruses, 10.3390/v14092065
SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances
- Sandra Hui, Rasmus Nielsen
- BMC Bioinformatics, 10.1186/s12859-022-04890-w
Estimating the timing of multiple admixture events using 3-locus linkage disequilibrium
- Mason Liang, Mikhail Shishkin, Anastasia Mikhailova, Vladimir Shchur, Rasmus Nielsen
- PLoS Genet, 10.1371/journal.pgen.1010281
distAngsd: Fast and Accurate Inference of Genetic Distances for Next-Generation Sequencing Data
- Lei Zhao, Rasmus Nielsen, Thorfinn Sand Korneliussen
- Mol Biol Evol, 10.1093/molbev/msac119
Evaluation of methods for estimating coalescence times using ancestral recombination graphs
- DĂ©bora Y C Brandt, Xinzhu Wei, Yun Deng, …, Yun Deng, Andrew H Vaughn, Rasmus Nielsen
- Genetics, 10.1093/genetics/iyac044
Inferring person-to-person networks of Plasmodium falciparum transmission: are analyses of routine surveillance data up to the task?
- John H Huber, Michelle S Hsiang, Nomcebo Dlamini, …, Nyasatu Ntshalintshali, Bryan Greenhouse, T Alex Perkins
- Malar J, 10.1186/s12936-022-04072-2
SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing
- Sandra Hui, Rasmus Nielsen, Sandra Hui, Rasmus Nielsen
- Bioinformatics, 10.1093/bioinformatics/btac041
