Academic lineage
Reviewing knowledgebase and database grant proposals in the life sciences: the role of innovation
- Peter D Karp, Peter D Karp, Peter D Karp, Peter D Karp, Peter D Karp
- Database (Oxford), 10.1093/database/baac106
Pathway Tools Management of Pathway/Genome Data for Microbial Communities
- Peter D Karp, Suzanne Paley, Markus Krummenacker, …, Anamika Kothari, Michael J Wannemuehler, Gregory J Phillips
- None, 10.3389/fbinf.2022.869150
Resources to Facilitate Use of the Altered Schaedler Flora (ASF) Mouse Model to Study Microbiome Function
- Alexandra Proctor, Shadi Parvinroo, Tanner Richie, …, Joseph F Pierre, Michael J Wannemuehler, Gregory J Phillips
- mSystems, 10.1128/msystems.00293-22
A roadmap for the functional annotation of protein families: a community perspective
- Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia Arighi, …, Valerie Wood, Elisha M Wood-Charlson, Jin Xu
- Database (Oxford), 10.1093/database/baac062
Metabolic Modeling with MetaFlux
- Mario Latendresse, Wai Kit Ong, Peter D Karp
- Methods Mol Biol, 10.1007/978-1-0716-1585-0_12
The EcoCyc Database in 2021
- Ingrid M Keseler, Socorro Gama-Castro, Amanda Mackie, …, Julio Collado-Vides, Ian T Paulsen, Peter D Karp
- None, 10.3389/fmicb.2021.711077
The BioCyc Metabolic Network Explorer
- Suzanne Paley, Peter D Karp
- BMC Bioinformatics, 10.1186/s12859-021-04132-5
Leveraging Curation Among Escherichia coli Pathway/Genome Databases Using Ortholog-Based Annotation Propagation
- Suzanne Paley, Ingrid M Keseler, Markus Krummenacker, Peter D Karp
- None, 10.3389/fmicb.2021.614355
Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics
- Peter D Karp, Peter E Midford, Ron Caspi, Arkady Khodursky
- BMC Genomics, 10.1186/s12864-021-07502-8
Pathway Tools Visualization of Organism-Scale Metabolic Networks
- Suzanne Paley, Richard Billington, James Herson, Markus Krummenacker, Peter D Karp
- None, 10.3390/metabo11020064
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology
- Peter D Karp, Peter E Midford, Richard Billington, …, Carol Fulcher, Ingrid M Keseler, Suzanne M Paley
- Brief Bioinform, 10.1093/bib/bbz104
