The Gene Ontology knowledgebase in 2023
- Suzi A Aleksander, James Balhoff, Seth Carbon, …, Sridhar Ramachandran, Leyla Ruzicka, Monte Westerfield
- Genetics, 10.1093/genetics/iyad031
A roadmap for the functional annotation of protein families: a community perspective
- Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia Arighi, …, Valerie Wood, Elisha M Wood-Charlson, Jin Xu
- Database (Oxford), 10.1093/database/baac062
Hierarchical deep learning for predicting GO annotations by integrating protein knowledge
- Gabriela A Merino, Rabie Saidi, Diego H Milone, …, Diego H Milone, Georgina Stegmayer, Maria J Martin
- Bioinformatics, 10.1093/bioinformatics/btac536
Standardized annotation of translated open reading frames
- Marie A Brunet, Ferriol Calvet, Irwin Jungreis, …, Alan Saghatelian, Jonathan S Weissman, Sebastiaan van Heesch
- Nat Biotechnol, 10.1038/s41587-022-01369-0
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics
- Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, …, Juan Antonio VizcaÃno, Eric W Deutsch, Andrew R Jones
- J Proteome Res, 10.1021/acs.jproteome.1c00827
The Quest for Orthologs orthology benchmark service in 2022
- Yannis Nevers, Tamsin E M Jones, Dushyanth Jyothi, …, Maria J Martin, Christophe Dessimoz, Adrian Altenhoff
- Nucleic Acids Res, 10.1093/nar/gkac330
Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation
- Anton Kalyuzhnyy, Patrick A Eyers, Claire E Eyers, …, Zhi Sun, Eric W Deutsch, Andrew R Jones
- J Proteome Res, 10.1021/acs.jproteome.2c00131
The IntAct database: efficient access to fine-grained molecular interaction data
- Noemi Del Toro, Anjali Shrivastava, Eliot Ragueneau, …, Pablo Porras, Kalpana Panneerselvam, Henning Hermjakob
- Nucleic Acids Res, 10.1093/nar/gkab1006
CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations
- Tunca DoÄŸan, Heval Atas, Vishal Joshi, …, Rengul Cetin-Atalay, Maria Martin, Volkan Atalay
- Nucleic Acids Res, 10.1093/nar/gkab543