Diploid-dominant life cycles characterize the early evolution of Fungi
- Kevin R Amses, D Rabern Simmons, Joyce E Longcore, …, Joseph W Spatafora, Jason E Stajich, Timothy Y James
- Proc Natl Acad Sci U S A, 10.1073/pnas.2116841119
Competition for DNA binding between paralogous transcription factors determines their genomic occupancy and regulatory functions
- Yuning Zhang, Tiffany D Ho, Nicolas E Buchler, Raluca Gordân
- Genome Res, 10.1101/gr.275145.120
Genetic transformation of Spizellomyces punctatus , a resource for studying chytrid biology and evolutionary cell biology
- Edgar M Medina, Kristyn A Robinson, Kimberly Bellingham-Johnstun, …, Caroline Laplante, Lillian K Fritz-Laylin, Nicolas E Buchler
- Elife, 10.7554/elife.52741
Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression
- Graeme J Gowans, Joseph B Bridgers, Jibo Zhang, …, Nicolas E Buchler, Brian D Strahl, Ashby J Morrison
- Mol Cell, 10.1016/j.molcel.2019.09.029
Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise
- Mariana Gómez-Schiavon, Nicolas E Buchler
- PLoS Comput Biol, 10.1371/journal.pcbi.1007364
Evolutionary innovation, fungal cell biology, and the lateral gene transfer of a viral KilA-N domain
- Edgar M Medina, Evan Walsh, Nicolas E Buchler
- Curr Opin Genet Dev, 10.1016/j.gde.2019.08.004
Enhancer Histone Acetylation Modulates Transcriptional Bursting Dynamics of Neuronal Activity-Inducible Genes
- Liang-Fu Chen, Yen Ting Lin, David A Gallegos, …, Jörg Grandl, Nicolas E Buchler, Anne E West
- Cell Rep, 10.1016/j.celrep.2019.01.032
Daily humidity oscillation regulates the circadian clock to influence plant physiology
- Musoki Mwimba, Sargis Karapetyan, Lijing Liu, …, Erin M McGinnis, Nicolas E Buchler, Xinnian Dong
- Nat Commun, 10.1038/s41467-018-06692-2
Efficient analysis of stochastic gene dynamics in the non-adiabatic regime using piecewise deterministic Markov processes
- Yen Ting Lin, Nicolas E Buchler
- J R Soc Interface, 10.1098/rsif.2017.0804
BayFish: Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells
- Mariana Gómez-Schiavon, Liang-Fu Chen, Anne E West, Nicolas E Buchler
- Genome Biol, 10.1186/s13059-017-1297-9
Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness
- Adi Hendler, Edgar M Medina, Anastasiya Kishkevich, …, Nicolas E Buchler, Robertus A M de Bruin, Amir Aharoni
- PLoS Genet, 10.1371/journal.pgen.1006778
Conservation and divergence of C-terminal domain structure in the retinoblastoma protein family
- Tyler J Liban, Edgar M Medina, Sarvind Tripathi, …, R William Henry, Nicolas E Buchler, Seth M Rubin
- Proc Natl Acad Sci U S A, 10.1073/pnas.1619170114
Long-term growth data of Escherichia coli at a single-cell level
- Yu Tanouchi, Anand Pai, Heungwon Park, Shuqiang Huang, Nicolas E Buchler, Lingchong You
- Sci Data, 10.1038/sdata.2017.36
Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi
- Edgar M Medina, Jonathan J Turner, Raluca Gordân, Jan M Skotheim, Nicolas E Buchler
- Elife, 10.7554/elife.09492
Role of DNA binding sites and slow unbinding kinetics in titration-based oscillators
- Sargis Karapetyan, Nicolas E Buchler
- None, 10.1103/physreve.92.062712
Cell cycle Start is coupled to entry into the yeast metabolic cycle across diverse strains and growth rates
- Anthony J Burnetti, Mert Aydin, Nicolas E Buchler
- Mol Biol Cell, 10.1091/mbc.e15-07-0454