Recursive Editing improves homology-directed repair through retargeting of undesired outcomes
- Lukas Möller, Eric J Aird, Markus S Schröder, …, Lucas Kissling, Lilly van de Venn, Jacob E Corn
- Nat Commun, 10.1038/s41467-022-31944-7
PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants
- Sebastian M Siegner, Mehmet E Karasu, Markus S Schröder, Zacharias Kontarakis, Jacob E Corn
- BMC Bioinformatics, 10.1186/s12859-021-04034-6
Controlled Cycling and Quiescence Enables Efficient HDR in Engraftment-Enriched Adult Hematopoietic Stem and Progenitor Cells
- Jiyung J Shin, Markus S Schröder, Francisco Caiado, …, Dirk Hockemeyer, Markus G Manz, Jacob E Corn
- Cell Rep, 10.1016/j.celrep.2020.108093
Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate
- Akhilesh Pandey, Eric W Stawiski, Steffen Durinck, …, Pramod Kumar Tiwari, Jin-Young Jang, Somasekar Seshagiri
- Nat Commun, 10.1038/s41467-020-17880-4
Effect of progesterone on Candida albicans biofilm formation under acidic conditions: A transcriptomic analysis
- Bruna Gonçalves, Ruben Bernardo, Can Wang, …, Mariana Henriques, Nuno Pereira Mira, Sónia Silva
- Int J Med Microbiol, 10.1016/j.ijmm.2020.151414
The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins
- Kushal Suryamohan, Sajesh P Krishnankutty, Joseph Guillory, …, R Manjunatha Kini, Arun Zachariah, Somasekar Seshagiri
- Nat Genet, 10.1038/s41588-019-0559-8
Identification of African-Specific Admixture between Modern and Archaic Humans
- Jeffrey D Wall, Aakrosh Ratan, Eric Stawiski
- Am J Hum Genet, 10.1016/j.ajhg.2019.11.005
Correlating Genotype and Phenotype in the Asexual Yeast Candida orthopsilosis Implicates ZCF29 in Sensitivity to Caffeine
- Kontxi Martinez de San Vicente, Markus S Schröder, Lisa Lombardi, Elise Iracane, Geraldine Butler
- G3 (Bethesda), 10.1534/g3.119.400348
Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis
- Yafeng Zhu, Pär G Engström, Christian Tellgren-Roth, …, Joseph Heitman, Annika Scheynius, Janne Lehtiö
- Nucleic Acids Res, 10.1093/nar/gkx006
The CgHaa1-Regulon Mediates Response and Tolerance to Acetic Acid Stress in the Human Pathogen Candida glabrata
- Ruben T Bernardo, Diana V Cunha, Can Wang, …, Joana Azeredo, Geraldine Butler, Nuno Pereira Mira
- G3 (Bethesda), 10.1534/g3.116.034660
Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer
- Deena M A Gendoo, Natchar Ratanasirigulchai, Markus S Schröder, …, Joel S Parker, Aleix Prat, Benjamin Haibe-Kains
- Bioinformatics, 10.1093/bioinformatics/btv693
Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin
- Guangxi Wu, He Zhao, Chenhao Li, …, Teun Boekhout, Niranjan Nagarajan, Thomas L Dawson
- PLoS Genet, 10.1371/journal.pgen.1005614
Using RNA-seq for Analysis of Differential Gene Expression in Fungal Species
- Can Wang, Markus S Schröder, Stephen Hammel, Geraldine Butler
- Methods Mol Biol, 10.1007/978-1-4939-3079-1_1
Comparative phenotypic analysis of the major fungal pathogens Candida parapsilosis and Candida albicans
- Linda M Holland, Markus S Schröder, Siobhán A Turner, …, Ken Haynes, Desmond G Higgins, Geraldine Butler
- PLoS Pathog, 10.1371/journal.ppat.1004365
Comparative genome analysis and gene finding in Candida species using CGOB
- Sarah L Maguire, Seán S ÓhÉigeartaigh, Kevin P Byrne, …, Peadar O’Gaora, Kenneth H Wolfe, Geraldine Butler
- Mol Biol Evol, 10.1093/molbev/mst042