Academic lineage
- Frances H Arnold - Ph.D. student
Deep self-supervised learning for biosynthetic gene cluster detection and product classification
- Carolina Rios-Martinez, Nicholas Bhattacharya, Ava P Amini, …, Ava P Amini, Lorin Crawford, Kevin K Yang
- PLoS Comput Biol, 10.1371/journal.pcbi.1011162
A topological data analytic approach for discovering biophysical signatures in protein dynamics
- Wai Shing Tang, Gabriel Monteiro da Silva, Henry Kirveslahti, …, Sayan Mukherjee, Brenda Rubenstein, Lorin Crawford
- PLoS Comput Biol, 10.1371/journal.pcbi.1010045
Machine learning modeling of family wide enzyme-substrate specificity screens
- Samuel Goldman, Ria Das, Kevin K Yang, Connor W Coley
- PLoS Comput Biol, 10.1371/journal.pcbi.1009853
Evolutionary velocity with protein language models predicts evolutionary dynamics of diverse proteins
- Brian L Hie, Kevin K Yang, Peter S Kim
- Cell Syst, 10.1016/j.cels.2022.01.003
Protein sequence design with deep generative models
- Zachary Wu, Kadina E Johnston, Frances H Arnold, Kevin K Yang
- Curr Opin Chem Biol, 10.1016/j.cbpa.2021.04.004
Learned Embeddings from Deep Learning to Visualize and Predict Protein Sets
- Christian Dallago, Konstantin Schütze, Michael Heinzinger, …, Sungroh Yoon, James T Morton, Burkhard Rost
- Curr Protoc, 10.1002/cpz1.113
Signal Peptides Generated by Attention-Based Neural Networks
- Zachary Wu, Kevin K Yang, Michael J Liszka, …, David Wernick, David P Weiner, Frances H Arnold
- ACS Synth Biol, 10.1021/acssynbio.0c00219
Machine learning-guided channelrhodopsin engineering enables minimally invasive optogenetics
- Claire N Bedbrook, Kevin K Yang, J Elliott Robinson, Elisha D Mackey, Viviana Gradinaru, Frances H Arnold
- Nat Methods, 10.1038/s41592-019-0583-8
Machine-learning-guided directed evolution for protein engineering
- Kevin K Yang, Zachary Wu, Frances H Arnold
- Nat Methods, 10.1038/s41592-019-0496-6