Pickaxe: a Python library for the prediction of novel metabolic reactions
- Kevin M Shebek, Jonathan Strutz, Linda J Broadbelt, …, Jonathan Strutz, Linda J Broadbelt, Keith E J Tyo
- BMC Bioinformatics, 10.1186/s12859-023-05149-8
Peptide-Based Vectors: A Biomolecular Engineering Strategy for Gene Delivery
- Sandeep Urandur, Millicent O Sullivan, Sandeep Urandur, …, Millicent O Sullivan, Sandeep Urandur, Millicent O Sullivan
- Annu Rev Chem Biomol Eng, 10.1146/annurev-chembioeng-101121-070232
A dynamic kinetic model captures cell-free metabolism for improved butanol production
- Jacob Martin, Blake Rasor, Jonathon DeBonis, …, Michael C Jewett, Keith E J Tyo, Linda J Broadbelt
- Metab Eng, 10.1016/j.ymben.2023.01.009
MINE 2.0: enhanced biochemical coverage for peak identification in untargeted metabolomics
- Jonathan Strutz, Kevin M Shebek, Linda J Broadbelt, …, Kevin M Shebek, Linda J Broadbelt, Keith E J Tyo
- Bioinformatics, 10.1093/bioinformatics/btac331
Chemical-damage MINE: A database of curated and predicted spontaneous metabolic reactions
- James G Jeffryes, Claudia Lerma-Ortiz, Filipe Liu, …, Andrew D Hanson, Keith Ej Tyo, Christopher S Henry
- Metab Eng, 10.1016/j.ymben.2021.11.009
Enabling commercial success of industrial biotechnology
- Bradley W Biggs, Hal S Alper, Brian F Pfleger, …, Christine N S Santos, Parayil Kumaran Ajikumar, Gregory Stephanopoulos
- Science, 10.1126/science.abj5040
Recording Temporal Signals with Minutes Resolution Using Enzymatic DNA Synthesis
- Namita Bhan, Alec Callisto, Jonathan Strutz, …, George Church, Konrad Kording, Keith E J Tyo
- J Am Chem Soc, 10.1021/jacs.1c07331
Engineering Acinetobacter baylyi ADP1 for mevalonate production from lignin-derived aromatic compounds
- Erika Arvay, Bradley W Biggs, Laura Guerrero, Virginia Jiang, Keith Tyo
- Metab Eng, 10.1016/j.mec.2021.e00173
Stepping on the Gas to a Circular Economy: Accelerating Development of Carbon-Negative Chemical Production from Gas Fermentation
- Nick Fackler, Björn D Heijstra, Blake J Rasor, …, Steven D Brown, Michael C Jewett, Michael Köpke
- Annu Rev Chem Biomol Eng, 10.1146/annurev-chembioeng-120120-021122
Curating a comprehensive set of enzymatic reaction rules for efficient novel biosynthetic pathway design
- Zhuofu Ni, Andrew E Stine, Keith E J Tyo, Linda J Broadbelt
- Metab Eng, 10.1016/j.ymben.2021.02.006