The proteomic landscape of genome-wide genetic perturbations
- Christoph B Messner, Vadim Demichev, Julia Muenzner, …, Charles Boone, Georg Kustatscher, Markus Ralser
- Cell, 10.1016/j.cell.2023.03.026
Cryptosporidium uses multiple distinct secretory organelles to interact with and modify its host cell
- Amandine Guérin, Katherine M Strelau, Konstantin Barylyuk, …, Kathryn S Lilley, Ross F Waller, Boris Striepen
- Cell Host Microbe, 10.1016/j.chom.2023.03.001
A proteomic survival predictor for COVID-19 patients in intensive care
- Vadim Demichev, Pinkus Tober-Lau, Tatiana Nazarenko, …, Leif Erik Sander, Florian Kurth, Markus Ralser
- None, 10.1371/journal.pdig.0000007
Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE
- Oliver M Crook, Colin T R Davies, Lisa M Breckels, …, Laurent Gatto, Paul D W Kirk, Kathryn S Lilley
- Nat Commun, 10.1038/s41467-022-33570-9
Operation of a TCA cycle subnetwork in the mammalian nucleus
- Eleni Kafkia, Amparo Andres-Pons, Kerstin Ganter, …, Christophe Lancrin, Martin Beck, Kiran Raosaheb Patil
- Sci Adv, 10.1126/sciadv.abq5206
dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts
- Vadim Demichev, Lukasz Szyrwiel, Fengchao Yu, …, Michael Mülleder, Alexey I Nesvizhskii, Markus Ralser
- Nat Commun, 10.1038/s41467-022-31492-0
CFTR Rescue by Lumacaftor (VX-809) Induces an Extensive Reorganization of Mitochondria in the Cystic Fibrosis Bronchial Epithelium
- Clarissa Braccia, Josie A Christopher, Oliver M Crook, …, Nicoletta Pedemonte, Kathryn S Lilley, Andrea Armirotti
- Cells, 10.3390/cells11121938
Prior Signal Acquisition Software Versions for Orbitrap Underestimate Low Isobaric Mass Tag Intensities, Without Detriment to Differential Abundance Experiments
- Tom S Smith, Anna Andrejeva, Josie Christopher, …, Oliver M Crook, Mohamed Elzek, Kathryn S Lilley
- None, 10.1021/acsmeasuresciau.1c00053
In Depth Exploration of the Alternative Proteome of Drosophila melanogaster
- Bertrand Fabre, Sebastien A Choteau, Carine Duboé, …, Jean-Philippe Combier, Kathryn S Lilley, Serge Plaza
- None, 10.3389/fcell.2022.901351
Drosophila nicotinic acetylcholine receptor subunits and their native interactions with insecticidal peptide toxins
- Dagmara Korona, Benedict Dirnberger, Carlo N G Giachello, …, Fergus G Earley, Steven Russell, Kathryn S Lilley
- Elife, 10.7554/elife.74322
An open invitation to the Understudied Proteins Initiative
- Tom Collins, Anne-Claude Gingras, Tiannan Guo, …, Edward M Marcotte, Markus Ralser, Juri Rappsilber
- Nat Biotechnol, 10.1038/s41587-022-01316-z
Understudied proteins: opportunities and challenges for functional proteomics
- Tom Collins, Anne-Claude Gingras, Tiannan Guo, …, Edward M Marcotte, Markus Ralser, Juri Rappsilber
- Nat Methods, 10.1038/s41592-022-01454-x
Multi-omic based production strain improvement (MOBpsi) for bio-manufacturing of toxic chemicals
- Joseph P Webb, Ana Carolina Paiva, Luca Rossoni, …, David J Kelly, Alex Conradie, Jeffrey Green
- Metab Eng, 10.1016/j.ymben.2022.03.004
Unresolved stalled ribosome complexes restrict cell-cycle progression after genotoxic stress
- Mark Stoneley, Robert F Harvey, Thomas E Mulroney, …, Kathryn S Lilley, Ritwick Sawarkar, Anne E Willis
- Mol Cell, 10.1016/j.molcel.2022.01.019
Proteomic analysis in primary T cells reveals IL-7 alters T cell receptor thresholding via CYTIP/cytohesin/LFA-1 localisation and activation
- Rayner M L Queiroz, Siân C Piper, Johanna S Rees, …, Kathryn S Lilley, Antony P Jackson, Donna K Finch
- Biochem J, 10.1042/bcj20210313
Subcellular Transcriptomics and Proteomics: A Comparative Methods Review
- Josie A Christopher, Aikaterini Geladaki, Charlotte S Dawson, Owen L Vennard, Kathryn S Lilley
- Mol Cell Proteomics, 10.1016/j.mcpro.2021.100186
