A proteomic survival predictor for COVID-19 patients in intensive care
- Vadim Demichev, Pinkus Tober-Lau, Tatiana Nazarenko, …, Leif Erik Sander, Florian Kurth, Markus Ralser
- None, 10.1371/journal.pdig.0000007
The impact of acute nutritional interventions on the plasma proteome
- Spyros I Vernardis, Vadim Demichev, Oliver Lemke, …, Claudia Langenberg, I Sadaf Farooqi, Markus Ralser
- J Clin Endocrinol Metab, 10.1210/clinem/dgad031
Cell-cell metabolite exchange creates a pro-survival metabolic environment that extends lifespan
- Clara Correia-Melo, Stephan Kamrad, Roland Tengölics, …, Balázs Papp, Mohammad Tauqeer Alam, Markus Ralser
- Cell, 10.1016/j.cell.2022.12.007
Learning deep representations of enzyme thermal adaptation
- Gang Li, Filip Buric, Jan Zrimec, …, Jens Nielsen, Aleksej Zelezniak, Martin K M Engqvist
- Protein Sci, 10.1002/pro.4480
Toward learning the principles of plant gene regulation
- Jan Zrimec, Aleksej Zelezniak, Kristina Gruden, Jan Zrimec, Aleksej Zelezniak, Kristina Gruden
- Trends Plant Sci, 10.1016/j.tplants.2022.08.010
Controlling gene expression with deep generative design of regulatory DNA
- Jan Zrimec, Xiaozhi Fu, Azam Sheikh Muhammad, …, Florian David, Jens Nielsen, Aleksej Zelezniak
- Nat Commun, 10.1038/s41467-022-32818-8
Enhanced metabolism and negative regulation of ER stress support higher erythropoietin production in HEK293 cells
- Rasool Saghaleyni, Magdalena Malm, Noah Moruzzi, …, Jens Nielsen, Jonathan L Robinson, Johan Rockberg
- Cell Rep, 10.1016/j.celrep.2022.110936
Data mining of Saccharomyces cerevisiae mutants engineered for increased tolerance towards inhibitors in lignocellulosic hydrolysates
- Elena Cámara, Lisbeth Olsson, Jan Zrimec, Aleksej Zelezniak, Cecilia Geijer, Yvonne Nygård
- Biotechnol Adv, 10.1016/j.biotechadv.2022.107947
Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends
- Jan Zrimec, Mariia Kokina, Sara Jonasson, Francisco Zorrilla, Aleksej Zelezniak
- mBio, 10.1128/mbio.02155-21
metaGEM: reconstruction of genome scale metabolic models directly from metagenomes
- Francisco Zorrilla, Filip Buric, Kiran R Patil, …, Filip Buric, Kiran R Patil, Aleksej Zelezniak
- Nucleic Acids Res, 10.1093/nar/gkab815
A time-resolved proteomic and prognostic map of COVID-19
- Vadim Demichev, Pinkus Tober-Lau, Oliver Lemke, …, Leif Erik Sander, Markus Ralser, Florian Kurth
- Cell Syst, 10.1016/j.cels.2021.05.005
Ultra-fast proteomics with Scanning SWATH
- Christoph B Messner, Vadim Demichev, Nic Bloomfield, …, Michael Mülleder, Stephen Tate, Markus Ralser
- Nat Biotechnol, 10.1038/s41587-021-00860-4