Academic lineage
- Bernhard Ø Palsson - Postdoctoral Associate
Engineering resource allocation in artificially minimized cells: Is genome reduction the best strategy?
- Elisa Marquez-Zavala, Jose Utrilla, Elisa Marquez-Zavala, …, Jose Utrilla, Elisa Marquez-Zavala, Jose Utrilla
- Microb Biotechnol, 10.1111/1751-7915.14233
Dynamic proteome allocation regulates the profile of interaction of auxotrophic bacterial consortia
- D Reyes-González, H De Luna-Valenciano, J Utrilla, …, M Sieber, R Peña-Miller, A Fuentes-Hernández
- None, 10.1098/rsos.212008
Regulatory perturbations of ribosome allocation in bacteria reshape the growth proteome with a trade-off in adaptation capacity
- David Hidalgo, César A Martínez-Ortiz, Bernhard O Palsson, José I Jiménez, José Utrilla
- None, 10.1016/j.isci.2022.103879
Metabolic reconstruction of Pseudomonas chlororaphis ATCC 9446 to understand its metabolic potential as a phenazine-1-carboxamide-producing strain
- Fabián Moreno-Avitia, José Utrilla, Francisco Bolívar, Juan Nogales, Adelfo Escalante
- Appl Microbiol Biotechnol, 10.1007/s00253-020-10913-4
Plasmid DNA Production in Proteome-Reduced Escherichia coli
- Mitzi de la Cruz, Elisa A Ramírez, Juan-Carlos Sigala, José Utrilla, Alvaro R Lara
- None, 10.3390/microorganisms8091444
Author Correction: A quantitative method for proteome reallocation using minimal regulatory interventions
- Gustavo Lastiri-Pancardo, Jonathan S Mercado-Hernández, Juhyun Kim, José I Jiménez, José Utrilla
- Nat Chem Biol, 10.1038/s41589-020-00666-6
Trade-offs between gene expression, growth and phenotypic diversity in microbial populations
- Juhyun Kim, Alexander Darlington, Manuel Salvador, José Utrilla, José I Jiménez
- Curr Opin Biotechnol, 10.1016/j.copbio.2019.08.004
Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism
- Chuankai Cheng, Edward J O’Brien, Douglas McCloskey, …, Adam M Feist, Bernhard O Palsson, Zachary A King
- PLoS Comput Biol, 10.1371/journal.pcbi.1007066
Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico
- Fernando Astudillo-Melgar, Adrián Ochoa-Leyva, José Utrilla, Gerardo Huerta-Beristain
- None, 10.3389/fmicb.2019.00531
Draft Genome Sequence of Sphingobacterium sp. CZ-UAM, Isolated from a Methanotrophic Consortium
- José Luis Steffani-Vallejo, Cristal Zuñiga, Pablo Cruz-Morales, …, Cuauhtemoc Licona-Cassani, Sergio Revah, José Utrilla
- None, 10.1128/genomea.00792-17
Draft Genome Sequence of Pseudomonas chlororaphis ATCC 9446, a Nonpathogenic Bacterium with Bioremediation and Industrial Potential
- Fabian Moreno-Avitia, Luis Lozano, Jose Utrilla, Francisco Bolívar, Adelfo Escalante
- None, 10.1128/genomea.00474-17
Production of d-lactate from sugarcane bagasse and corn stover hydrolysates using metabolic engineered Escherichia coli strains
- José Utrilla, Alejandra Vargas-Tah, Berenice Trujillo-Martínez, Guillermo Gosset, Alfredo Martinez
- Bioresour Technol, 10.1016/j.biortech.2016.08.067
Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments
- Edward J O’Brien, Jose Utrilla, Bernhard O Palsson
- PLoS Comput Biol, 10.1371/journal.pcbi.1004998
Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution
- Jose Utrilla, Edward J O’Brien, Ke Chen, …, Dagoberto Armenta-Medina, Adam M Feist, Bernhard O Palsson
- Cell Syst, 10.1016/j.cels.2016.04.003