Academic lineage
Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data
- Johan Gustafsson, Mihail Anton, Fariba Roshanzamir, …, Eduard J Kerkhoven, Jonathan L Robinson, Jens Nielsen
- Proc Natl Acad Sci U S A, 10.1073/pnas.2217868120
Metastatic triple negative breast cancer adapts its metabolism to destination tissues while retaining key metabolic signatures
- Fariba Roshanzamir, Jonathan L Robinson, Daniel Cook, Mohammad Hossein Karimi-Jafari, Jens Nielsen
- Proc Natl Acad Sci U S A, 10.1073/pnas.2205456119
Enhanced metabolism and negative regulation of ER stress support higher erythropoietin production in HEK293 cells
- Rasool Saghaleyni, Magdalena Malm, Noah Moruzzi, …, Jens Nielsen, Jonathan L Robinson, Johan Rockberg
- Cell Rep, 10.1016/j.celrep.2022.110936
Silencing of STE20-type kinase STK25 in human aortic endothelial and smooth muscle cells is atheroprotective
- Emmelie Cansby, Sima Kumari, Mara Caputo, …, Andreas Edsfeldt, Isabel Goncalves, Margit Mahlapuu
- Commun Biol, 10.1038/s42003-022-03309-9
Genome-scale metabolic network reconstruction of model animals as a platform for translational research
- Hao Wang, Jonathan L Robinson, Pinar Kocabas, …, Mattias Uhlen, Henrik Zetterberg, Jens Nielsen
- Proc Natl Acad Sci U S A, 10.1073/pnas.2102344118
BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq
- Johan Gustafsson, Jonathan Robinson, Jens Nielsen, Lior Pachter
- Genome Biol, 10.1186/s13059-021-02386-z
Machine learning-based investigation of the cancer protein secretory pathway
- Rasool Saghaleyni, Azam Sheikh Muhammad, Pramod Bangalore, Jens Nielsen, Jonathan L Robinson
- PLoS Comput Biol, 10.1371/journal.pcbi.1008898
UPLC-ESI-MRM/MS for Absolute Quantification and MS/MS Structural Elucidation of Six Specialized Pyranonaphthoquinone Metabolites From Ventilago harmandiana
- Suphitcha Limjiasahapong, Khwanta Kaewnarin, Narumol Jariyasopit, …, Chutima Kuhakarn, Vichai Reutrakul, Sakda Khoomrung
- None, 10.3389/fpls.2020.602993
DSAVE: Detection of misclassified cells in single-cell RNA-Seq data
- Johan Gustafsson, Jonathan Robinson, Juan S Inda-DÃaz, Elias Björnson, Rebecka Jörnsten, Jens Nielsen
- PLoS One, 10.1371/journal.pone.0243360