Academic lineage
Genome sequencing and multifaceted taxonomic analysis of novel strains of violacein-producing bacteria and non-violacein-producing close relatives
- Marina Estella De LeĂłn, Harriet S Wilson, Guillaume Jospin, …, Harriet S Wilson, Guillaume Jospin, Jonathan A Eisen
- Microb Genom, 10.1099/mgen.0.000971
Draft Genome Sequences of Spacecraft-Associated Microbes Isolated from Six NASA Missions
- Michelle T Tran, Arman Seuylemezian, Alonna Wright, …, David Coil, Jonathan Eisen, Lisa Guan
- None, 10.1128/mra.01011-22
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies
- Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Muñoz, …, Alan W Walker, Moran Yassour, Jens Walter
- Nature, 10.1038/s41586-022-05546-8
Human soft tissue sarcomas harbor an intratumoral viral microbiome which is linked with natural killer cell infiltrate and prognosis
- Lauren M Perry, Sylvia M Cruz, Kara T Kleber, …, William J Murphy, Jonathan A Eisen, Robert J Canter
- J Immunother Cancer, 10.1136/jitc-2021-004285
Taxonomic, Genomic, and Functional Variation in the Gut Microbiomes of Wild Spotted Hyenas Across 2 Decades of Study
- Connie A Rojas, Kay E Holekamp, Mariette Viladomat Jasso, …, Valeria Souza, Jonathan A Eisen, Kevin R Theis
- mSystems, 10.1128/msystems.00965-22
SARS-CoV-2 RNA Is Readily Detectable at Least 8 Months after Shedding in an Isolation Facility
- David A Coil, Randi Pechacek, Mo Kaze, …, Jonathan A Eisen, Karen Shapiro, Heather N Bischel
- mSphere, 10.1128/msphere.00177-22
The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs
- Friederike Clever, Jade M Sourisse, Richard F Preziosi, …, Andrew H Altieri, W Owen McMillan, Matthieu Leray
- Commun Biol, 10.1038/s42003-022-03679-0
Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity
- Elizabeth G Wilbanks, Hugo Doré, Meredith H Ashby, Cheryl Heiner, Richard J Roberts, Jonathan A Eisen
- ISME J, 10.1038/s41396-022-01242-7
Differences in gut microbiome by insulin sensitivity status in Black and White women of the National Growth and Health Study (NGHS): A pilot study
- Candice A Price, Guillaume Jospin, Kristy Brownell, Jonathan A Eisen, Barbara Laraia, Elissa S Epel
- PLoS One, 10.1371/journal.pone.0259889
Draft Genome Sequences and Genomic Analysis for Pigment Production in Bacteria Isolated from Blue Discolored Soymilk and Tofu
- Marina E De LeĂłn, Harriet S Wilson, Guillaume Jospin, Jonathan A Eisen
- None, 10.7150/jgen.65500
Phylogeny and Evolutionary History of Respiratory Complex I Proteins in Melainabacteria
- Christen Grettenberger, Dawn Y Sumner, Jonathan A Eisen, Anne D Jungblut, Tyler J Mackey
- Genes (Basel), 10.3390/genes12060929
SARS-CoV-2 detection and genomic sequencing from hospital surface samples collected at UC Davis
- David A Coil, Timothy Albertson, Shefali Banerjee, …, Daniel G Tompkins, Alexandre Tremeau-Bravard, Angela Haczku
- PLoS One, 10.1371/journal.pone.0253578
Correction: Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina
- Cassandra L Ettinger, Jonathan A Eisen
- PLoS One, 10.1371/journal.pone.0251536
Global Diversity and Biogeography of the Zostera marina Mycobiome
- Cassandra L Ettinger, Laura E Vann, Jonathan A Eisen
- Appl Environ Microbiol, 10.1128/aem.02795-20
Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience
- Robert E Furrow, Hyunsoo G Kim, Samah M R Abdelrazek, …, Mark S Goldman, John G Albeck, Marc T Facciotti
- None, 10.3389/fmicb.2020.581903
Author Correction: Roadmap for naming uncultivated Archaea and Bacteria
- Alison E Murray, John Freudenstein, Simonetta Gribaldo, …, Pablo Yarza, Brian P Hedlund, Anna-Louise Reysenbach
- Nat Microbiol, 10.1038/s41564-020-00827-2
Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum
- Katherine E Dahlhausen, Guillaume Jospin, David A Coil, Jonathan A Eisen, Laetitia G E Wilkins
- PeerJ, 10.7717/peerj.10177
Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN
- Jacob P Beam, Eric D Becraft, Julia M Brown, …, Tullis C Onstott, Tanja Woyke, Ramunas Stepanauskas
- None, 10.3389/fmicb.2020.01848
Bacterial communities associated with cell phones and shoes
- David A Coil, Russell Y Neches, Jenna M Lang, …, Jarrad Hampton-Marcell, Jack A Gilbert, Jonathan A Eisen
- PeerJ, 10.7717/peerj.9235
A phylogenetically novel cyanobacterium most closely related to Gloeobacter
- Christen L Grettenberger, Dawn Y Sumner, Kate Wall, …, Ian Hawes, Guillaume Jospin, Anne D Jungblut
- ISME J, 10.1038/s41396-020-0668-5
Correction for Dietz et al., “2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission”
- Leslie Dietz, Patrick F Horve, David A Coil, Mark Fretz, Jonathan A Eisen, Kevin Van Den Wymelenberg
- mSystems, 10.1128/msystems.00375-20
Draft Genome Analysis of Christensenella minuta DSM 22607, exhibiting an unusual expansion of transporter homologs of unknown function
- David A Coil, Guillaume Jospin, Jonathan A Eisen
- None, 10.7150/jgen.43162
Author Correction: Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
- Laetitia G E Wilkins, Cassandra L Ettinger, Guillaume Jospin, Jonathan A Eisen
- Sci Rep, 10.1038/s41598-020-60390-y
Whole genome sequence analysis reveals the broad distribution of the RtxA type 1 secretion system and four novel putative type 1 secretion systems throughout the Legionella genus
- Connor L Brown, Emily Garner, Guillaume Jospin, …, Jonathan A Eisen, Biswarup Mukhopadhyay, Amy J Pruden
- PLoS One, 10.1371/journal.pone.0223033
Energetic and Environmental Constraints on the Community Structure of Benthic Microbial Mats in Lake Fryxell, Antarctica
- Megan L Dillon, Ian Hawes, Anne D Jungblut, …, Jonathan A Eisen, Peter T Doran, Dawn Y Sumner
- FEMS Microbiol Ecol, 10.1093/femsec/fiz207
Bacterial Community Sequences of Submerged Aquatic Vegetation in the Potomac River
- Alexandra Alexiev, Laura E Vann, Jenna M Lang, Jonathan A Eisen
- None, 10.1128/mra.01175-19
The emergence of microbiome centres
- Jennifer B H Martiny, Katrine L Whiteson, Brendan J M Bohannan, …, Catherine A Pfister, Lita Proctor, Joel L Sachs
- Nat Microbiol, 10.1038/s41564-019-0644-x
Prospecting Microbial Strains for Bioremediation and Probiotics Development for Metaorganism Research and Preservation
- Helena D M Villela, Caren L S Vilela, Juliana M Assis, …, David A Coil, Jonathan A Eisen, Raquel S Peixoto
- J Vis Exp, 10.3791/60238
Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016
- Emily Garner, Connor L Brown, David Otto Schwake, …, Jonathan A Eisen, Marc A Edwards, Amy Pruden
- Emerg Infect Dis, 10.3201/eid2511.181032
Early-Career Scientists Shaping the World
- Ileana M Cristea, Pieter C Dorrestein, Jonathan A Eisen, …, Pamela A Silver, Nicole S Webster, Jian Xu
- mSystems, 10.1128/msystems.00196-19
Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria
- Holly M Bik, Alexandra Alexiev, Sabreen K Aulakh, …, Akshay Sethi, Jonathan A Eisen, David A Coil
- mSphere, 10.1128/msphere.00043-19
Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation
- Phillipe M Rosado, Deborah C A Leite, Gustavo A S Duarte, …, Jonathan A Eisen, David G Bourne, Raquel S Peixoto
- ISME J, 10.1038/s41396-018-0323-6
