Single-cell gene regulation across aging tissues
- Cyril Lagger, João Pedro de Magalhães, Cyril Lagger, João Pedro de Magalhães, Cyril Lagger, João Pedro de Magalhães
- Nat Aging, 10.1038/s43587-022-00238-4
Ageing as a software design flaw
- João Pedro de Magalhães, João Pedro de Magalhães, João Pedro de Magalhães, João Pedro de Magalhães
- Genome Biol, 10.1186/s13059-023-02888-y
Selective ablation of primary and paracrine senescent cells by targeting iron dyshomeostasis
- Tesfahun Dessale Admasu, Kristie Kim, Michael Rae, …, Adam R Renslo, Alexandra Stolzing, Amit Sharma
- Cell Rep, 10.1016/j.celrep.2023.112058
GeneFriends: gene co-expression databases and tools for humans and model organisms
- Priyanka Raina, Rodrigo Guinea, Kasit Chatsirisupachai, …, Cristina Guinea, Csaba-Attila Solyom, João Pedro de Magalhães
- Nucleic Acids Res, 10.1093/nar/gkac1031
DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology
- Yuxin Zhang, Jie Jiang, Jiongming Ma, …, Daniel J Rigden, Daiyun Hang, Kunqi Chen
- Nucleic Acids Res, 10.1093/nar/gkac1061
Interpretable Ensembles of Classifiers for Uncertain Data With Bioinformatics Applications
- Marcelo Rodrigues de Holanda Maia, Alexandre Plastino, Alex A Freitas, …, Alexandre Plastino, Alex Freitas, Joao Pedro de Magalhaes
- IEEE/ACM Trans Comput Biol Bioinform, 10.1109/tcbb.2022.3218588
Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation
- Daiyun Huang, Kunqi Chen, Bowen Song, …, João Pedro de Magalhães, Daniel J Rigden, Jia Meng
- Nucleic Acids Res, 10.1093/nar/gkac830
m6A-TSHub: Unveiling the Context-specific m 6 A Methylation and m6A-affecting Mutations in 23 Human Tissues
- Bowen Song, Daiyun Huang, Yuxin Zhang, …, Daniel J Rigden, Jia Meng, Kunqi Chen
- Genomics Proteomics Bioinformatics, 10.1016/j.gpb.2022.09.001
Age-associated differences in the cancer molecular landscape
- Kasit Chatsirisupachai, Cyril Lagger, João Pedro de Magalhães, Kasit Chatsirisupachai, Cyril Lagger, João Pedro de Magalhães
- Trends Cancer, 10.1016/j.trecan.2022.06.007
Skin Aging in Long-Lived Naked Mole-Rats Is Accompanied by Increased Expression of Longevity-Associated and Tumor Suppressor Genes
- Iqra Fatima, Guodong Chen, Natalia V Botchkareva, …, Andrei N Mardaryev, Chris G Faulkes, Vladimir A Botchkarev
- J Invest Dermatol, 10.1016/j.jid.2022.04.028
Identifying Novel Osteoarthritis-Associated Genes in Human Cartilage Using a Systematic Meta-Analysis and a Multi-Source Integrated Network
- Emily Shorter, Roberto Avelar, Margarita Zachariou, …, Kasia Goljanek-Whysall, João Pedro de Magalhães, Blandine Poulet
- Int J Mol Sci, 10.3390/ijms23084395
Hallmarks of aging-based dual-purpose disease and age-associated targets predicted using PandaOmics AI-powered discovery engine
- Frank W Pun, Geoffrey Ho Duen Leung, Hoi Wing Leung, …, Alexey Moskalev, João Pedro de Magalhães, Alex Zhavoronkov
- Aging (Albany NY), 10.18632/aging.203960
Machine learning-based predictions of dietary restriction associations across ageing-related genes
- Gustavo Daniel Vega Magdaleno, Vladislav Bespalov, Yalin Zheng, Alex A Freitas, Joao Pedro de Magalhaes
- BMC Bioinformatics, 10.1186/s12859-021-04523-8
WHISTLE server: A high-accuracy genomic coordinate-based machine learning platform for RNA modification prediction
- Lian Liu, Bowen Song, Kunqi Chen, …, Daniel J Rigden, Xiujuan Lei, Zhen Wei
- Methods, 10.1016/j.ymeth.2021.07.003