Academic lineage
- Bernhard Ø Palsson - Ph.D. student
Metabolic modeling of sex-specific tissue predicts mechanisms of differences in toxicological responses
- Connor J Moore, Christopher P Holstege, Jason A Papin, …, Connor J Moore, Christopher P Holstege, Jason A Papin
- None, 10.1101/2023.02.07.527430
How can systems approaches help us understand and treat infectious disease?
- Anna Kuchina, Jason Yang, Bree Aldridge, …, Shirit Einav, Jason Papin, Ronald N Germain
- Cell Syst, 10.1016/j.cels.2022.11.009
Ten simple rules for launching an academic research career
- Jason A Papin, Jessica Keim-Malpass, Sana Syed, …, Jason A Papin, Jessica Keim-Malpass, Sana Syed
- PLoS Comput Biol, 10.1371/journal.pcbi.1010689
Metabolic Network Models of the Gardnerella Pangenome Identify Key Interactions with the Vaginal Environment
- Lillian R Dillard, Emma M Glass, Amanda L Lewis, …, Amanda L Lewis, Krystal Thomas-White, Jason A Papin
- mSystems, 10.1128/msystems.00689-22
Genome-scale metabolic modeling reveals increased reliance on valine catabolism in clinical isolates of Klebsiella pneumoniae
- Matthew L Jenior, Mary E Dickenson, Jason A Papin
- NPJ Syst Biol Appl, 10.1038/s41540-022-00252-7
New perspectives into the vaginal microbiome with systems biology
- Christina Y Lee, Lillian R Dillard, Jason A Papin, …, Lillian R Dillard, Jason A Papin, Kelly B Arnold
- Trends Microbiol, 10.1016/j.tim.2022.09.011
Leveraging metabolic modeling to identify functional metabolic alterations associated with COVID-19 disease severity
- L R Dillard, N Wase, G Ramakrishnan, …, A N Donlan, W Petri, J A Papin
- Metabolomics, 10.1007/s11306-022-01904-9
Advancing code sharing in the computational biology community
- Lauren Cadwallader, Feilim Mac Gabhann, Jason Papin, Virginia E Pitzer
- PLoS Comput Biol, 10.1371/journal.pcbi.1010193
Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models
- Maureen A Carey, Gregory L Medlock, MichaÅ‚ Stolarczyk, …, William A Petri, Jennifer L Guler, Jason A Papin
- PLoS Comput Biol, 10.1371/journal.pcbi.1009870
Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions
- Thomas J Moutinho, Benjamin C Neubert, Matthew L Jenior, …, Benjamin C Neubert, Matthew L Jenior, Jason A Papin
- PLoS Comput Biol, 10.1371/journal.pcbi.1009341