HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer
- Le Yuan, Hongzhong Lu, Feiran Li, …, Feiran Li, Jens Nielsen, Eduard J Kerkhoven
- Brief Bioinform, 10.1093/bib/bbad035
A Pan-Draft Metabolic Model Reflects Evolutionary Diversity across 332 Yeast Species
- Hongzhong Lu, Eduard J Kerkhoven, Jens Nielsen
- Biomolecules, 10.3390/biom12111632
Heparin mimetics as potential intervention for COVID-19 and their bio-manufacturing
- Lan Jiang, Tianji Zhang, Hongzhong Lu, …, Jin-Ping Li, Hongmei Li, Xueting Liu
- None, 10.1016/j.synbio.2022.10.002
Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection
- Hongzhong Lu, Feiran Li, Le Yuan, …, Boyang Ji, Eduard J Kerkhoven, Jens Nielsen
- Mol Syst Biol, 10.15252/msb.202110427
Multiscale models quantifying yeast physiology: towards a whole-cell model
- Hongzhong Lu, Eduard J Kerkhoven, Jens Nielsen
- Trends Biotechnol, 10.1016/j.tibtech.2021.06.010
Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
- Hongzhong Lu, Feiran Li, BenjamÃn J Sánchez, …, Nikolaus Sonnenschein, Eduard J Kerkhoven, Jens Nielsen
- Nat Commun, 10.1038/s41467-020-19358-9
Multi-scale data-driven engineering for biosynthetic titer improvement
- Zhixing Cao, Jiaming Yu, Weishan Wang, …, Huifeng Wang, Siliang Zhang, Lixin Zhang
- Curr Opin Biotechnol, 10.1016/j.copbio.2020.04.002
Improving cytosolic aspartate biosynthesis increases glucoamylase production in Aspergillus niger under oxygen limitation
- Weiqiang Cao, Guan Wang, Hongzhong Lu, …, Ju Chu, Yufei Sui, Yingping Zhuang
- Microb Cell Fact, 10.1186/s12934-020-01340-1
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
- Hongzhong Lu, Feiran Li, BenjamÃn J Sánchez, …, Nikolaus Sonnenschein, Eduard J Kerkhoven, Jens Nielsen
- Nat Commun, 10.1038/s41467-019-11581-3
Integrated analysis of the yeast NADPH-regulator Stb5 reveals distinct differences in NADPH requirements and regulation in different states of yeast metabolism
- Liming Ouyang, Petter Holland, Hongzhong Lu, David Bergenholm, Jens Nielsen
- FEMS Yeast Res, 10.1093/femsyr/foy091
Comprehensive reconstruction and evaluation of Pichia pastoris genome-scale metabolic model that accounts for 1243 ORFs
- Rui Ye, Mingzhi Huang, Hongzhong Lu, …, Ju Chu, Yingping Zhuang, Siliang Zhang
- None, 10.1186/s40643-017-0152-x