integRATE: a desirability-based data integration framework for the prioritization of candidate genes across heterogeneous omics and its application to preterm birth
- Haley R Eidem, Jacob L Steenwyk, Jennifer H Wisecaver, John A Capra, Patrick Abbot, Antonis Rokas
- BMC Med Genomics, 10.1186/s12920-018-0426-y
Correction: Whole exome sequencing reveals HSPA1L as a genetic risk factor for spontaneous preterm birth
- Johanna M Huusko, Minna K Karjalainen, Britney E Graham, …, Kelli K Ryckman, Mikko Hallman, Louis J Muglia
- PLoS Genet, 10.1371/journal.pgen.1007673
The transformative potential of an integrative approach to pregnancy
- Haley R Eidem, Kriston L McGary, John A Capra, Patrick Abbot, Antonis Rokas
- Placenta, 10.1016/j.placenta.2017.07.010
Comprehensive RNA profiling of villous trophoblast and decidua basalis in pregnancies complicated by preterm birth following intra-amniotic infection
- William E Ackerman, Irina A Buhimschi, Haley R Eidem, …, Taryn L Summerfield, Mark B Landon, Catalin S Buhimschi
- Placenta, 10.1016/j.placenta.2016.05.010
Comparing human and macaque placental transcriptomes to disentangle preterm birth pathology from gestational age effects
- Haley R Eidem, David C Rinker, William E Ackerman, …, Louis J Muglia, Patrick Abbot, Antonis Rokas
- Placenta, 10.1016/j.placenta.2016.03.006
Integrating Diverse Types of Genomic Data to Identify Genes that Underlie Adverse Pregnancy Phenotypes
- Jibril Hirbo, Haley Eidem, Antonis Rokas, Patrick Abbot
- PLoS One, 10.1371/journal.pone.0144155
GEneSTATION 1.0: a synthetic resource of diverse evolutionary and functional genomic data for studying the evolution of pregnancy-associated tissues and phenotypes
- Mara Kim, Brian A Cooper, Rohit Venkat, …, Patrick Abbot, Antonis Rokas, Kriston L McGary
- Nucleic Acids Res, 10.1093/nar/gkv1137
Gestational tissue transcriptomics in term and preterm human pregnancies: a systematic review and meta-analysis
- Haley R Eidem, William E Ackerman, Kriston L McGary, Patrick Abbot, Antonis Rokas
- BMC Med Genomics, 10.1186/s12920-015-0099-8
Shared Selective Pressures on Fungal and Human Metabolic Pathways Lead to Divergent yet Analogous Genetic Responses
- Haley R Eidem, Kriston L McGary, Antonis Rokas
- Mol Biol Evol, 10.1093/molbev/msv034
Intentions to receive individual results from whole-genome sequencing among participants in the ClinSeq study
- Flavia M Facio, Haley Eidem, Tyler Fisher, …, Kimberly A Kaphingst, Leslie G Biesecker, Barbara B Biesecker
- Eur J Hum Genet, 10.1038/ejhg.2012.179
Effects of informed consent for individual genome sequencing on relevant knowledge
- K A Kaphingst, F M Facio, M-R Cheng, …, A Linn, B B Biesecker, L G Biesecker
- Clin Genet, 10.1111/j.1399-0004.2012.01909.x