BaM-seq and TBaM-seq, highly multiplexed and targeted RNA-seq protocols for rapid, low-cost library generation from bacterial samples
- Grace E Johnson, Darren J Parker, Jean-Benoit Lalanne, …, Jean-Benoit Lalanne, Mirae L Parker, Gene-Wei Li
- None, 10.1093/nargab/lqad017
Quantitative Control for Stoichiometric Protein Synthesis
- James C Taggart, Jean-Benoît Lalanne, Gene-Wei Li
- Annu Rev Microbiol, 10.1146/annurev-micro-041921-012646
Sigma factor dependent translational activation in Bacillus subtilis
- Dylan M McCormick, Jean-Benoît Lalanne, Tammy C T Lan, Silvi Rouskin, Gene-Wei Li
- RNA, 10.1261/rna.078747.121
Editorial overview: Microbial systems biology
- Athanasios Nassos Typas, Gene-Wei Li
- Curr Opin Microbiol, 10.1016/j.mib.2020.11.004
Growth-Optimized Aminoacyl-tRNA Synthetase Levels Prevent Maximal tRNA Charging
- Darren J Parker, Jean-Benoît Lalanne, Satoshi Kimura, Grace E Johnson, Matthew K Waldor, Gene-Wei Li
- Cell Syst, 10.1016/j.cels.2020.07.005
Keeping the Proportions of Protein Complex Components in Check
- James Christopher Taggart, Henrik Zauber, Matthias Selbach, Gene-Wei Li, Erik McShane
- Cell Syst, 10.1016/j.cels.2020.01.004
Transcriptional Regulation and Mechanism of SigN (ZpdN), a pBS32-Encoded Sigma Factor in Bacillus subtilis
- Aisha T Burton, Aaron DeLoughery, Gene-Wei Li, Daniel B Kearns
- mBio, 10.1128/mbio.01899-19
Rapid Accumulation of Motility-Activating Mutations in Resting Liquid Culture of Escherichia coli
- Darren J Parker, Pınar Demetci, Gene-Wei Li
- J Bacteriol, 10.1128/jb.00259-19
Genome-Wide Quantitation of Protein Synthesis Rates in Bacteria
- Grace E Johnson, Gene-Wei Li
- Methods Enzymol, 10.1016/bs.mie.2018.08.031
Maturation of polycistronic mRNAs by the endoribonuclease RNase Y and its associated Y-complex in Bacillus subtilis
- Aaron DeLoughery, Jean-Benoît Lalanne, Richard Losick, Gene-Wei Li
- Proc Natl Acad Sci U S A, 10.1073/pnas.1803283115
A Stress Response that Monitors and Regulates mRNA Structure Is Central to Cold Shock Adaptation
- Yan Zhang, David H Burkhardt, Silvi Rouskin, Gene-Wei Li, Jonathan S Weissman, Carol A Gross
- Mol Cell, 10.1016/j.molcel.2018.02.035
Evolutionary Convergence of Pathway-Specific Enzyme Expression Stoichiometry
- Jean-Benoît Lalanne, James C Taggart, Monica S Guo, Lydia Herzel, Ariel Schieler, Gene-Wei Li
- Cell, 10.1016/j.cell.2018.03.007
Genome-wide screen for genes involved in eDNA release during biofilm formation by Staphylococcus aureus
- Alicia S DeFrancesco, Nadezda Masloboeva, Adnan K Syed, …, Michael S Gilmore, Suzanne Walker, Richard Losick
- Proc Natl Acad Sci U S A, 10.1073/pnas.1704544114
Operon mRNAs are organized into ORF-centric structures that predict translation efficiency
- David H Burkhardt, Silvi Rouskin, Yan Zhang, Gene-Wei Li, Jonathan S Weissman, Carol A Gross
- Elife, 10.7554/elife.22037
Dynamic translation regulation in Caulobacter cell cycle control
- Jared M Schrader, Gene-Wei Li, W Seth Childers, …, Jonathan S Weissman, Lucy Shapiro, Harley H McAdams
- Proc Natl Acad Sci U S A, 10.1073/pnas.1614795113
How do bacteria tune translation efficiency?
- Gene-Wei Li
- Curr Opin Microbiol, 10.1016/j.mib.2015.01.001
The coding and noncoding architecture of the Caulobacter crescentus genome
- Jared M Schrader, Bo Zhou, Gene-Wei Li, …, Harley H McAdams, Jonathan S Weissman, Lucy Shapiro
- PLoS Genet, 10.1371/journal.pgen.1004463
Curation accuracy of model organism databases
- Ingrid M Keseler, Marek Skrzypek, Deepika Weerasinghe, …, Edmond D Chow, Gavin Sherlock, Peter D Karp
- Database (Oxford), 10.1093/database/bau058
Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources
- Gene-Wei Li, David Burkhardt, Carol Gross, Jonathan S Weissman
- Cell, 10.1016/j.cell.2014.02.033