Chromatin profiles classify castration-resistant prostate cancers suggesting therapeutic targets
- Fanying Tang, Duo Xu, Shangqian Wang, …, Andrea Sboner, Yu Chen, Ekta Khurana
- Science, 10.1126/science.abe1505
A global metagenomic map of urban microbiomes and antimicrobial resistance
- David Danko, Daniela Bezdan, Evan E Afshin, …, Jifeng Zhu, Sibo Zhu, Christopher E Mason
- Cell, 10.1016/j.cell.2021.05.002
Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway
- Jian Carrot-Zhang, Xiaotong Yao, Siddhartha Devarakonda, …, Matthew Meyerson, Ramaswamy Govindan, Marcin Imielinski
- Cell Rep, 10.1016/j.celrep.2021.108784
netboxr: Automated discovery of biological process modules by network analysis in R
- Eric Minwei Liu, Augustin Luna, Guanlan Dong, Chris Sander
- PLoS One, 10.1371/journal.pone.0234669
CNCDatabase: a database of non-coding cancer drivers
- Eric Minwei Liu, Alexander Martinez-Fundichely, Rajesh Bollapragada, Maurice Spiewack, Ekta Khurana
- Nucleic Acids Res, 10.1093/nar/gkaa915
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
- Matthew H Bailey, William U Meyerson, Lewis Jonathan Dursi, …, Jared T Simpson, Mark B Gerstein, Li Ding
- Nat Commun, 10.1038/s41467-020-18151-y
Sex differences in oncogenic mutational processes
- Constance H Li, Stephenie D Prokopec, Ren X Sun, …, Fouad Yousif, Nathaniel Schmitz, Paul C Boutros
- Nat Commun, 10.1038/s41467-020-17359-2
Combined burden and functional impact tests for cancer driver discovery using DriverPower
- Steven Gallinger, Lincoln Stein, Steven Gallinger, …, Shimin Shuai, Steven Gallinger, Lincoln D Stein
- Nat Commun, 10.1038/s41467-019-13929-1
Pathway and network analysis of more than 2500 whole cancer genomes
- Matthew A Reyna, David Haan, Marta Paczkowska, …, Jüri Reimand, Joshua M Stuart, Benjamin J Raphael
- Nat Commun, 10.1038/s41467-020-14367-0
Integrative pathway enrichment analysis of multivariate omics data
- Marta Paczkowska, Jonathan Barenboim, Nardnisa Sintupisut, …, Miles W Mee, Paul C Boutros, Jüri Reimand
- Nat Commun, 10.1038/s41467-019-13983-9
Identification of Cancer Drivers at CTCF Insulators in 1,962 Whole Genomes
- Eric Minwei Liu, Alexander Martinez-Fundichely, Bianca Jay Diaz, …, Effie Apostolou, Neville E Sanjana, Ekta Khurana
- Cell Syst, 10.1016/j.cels.2019.04.001
Integrated Molecular Characterization of Testicular Germ Cell Tumors
- Hui Shen, Juliann Shih, Daniel P Hollern, …, Katherine L Nathanson, Victoria K Cortessis, Katherine A Hoadley
- Cell Rep, 10.1016/j.celrep.2018.05.039