Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope Platform
- David Roche, Alexandra Calteau, David Vallenet, …, David Roche, Alexandra Calteau, David Vallenet
- Methods Mol Biol, 10.1007/978-1-0716-2871-3_13
Magnetosome proteins belong to universal protein families involved in many cell processes
- Caroline L Monteil, David Vallenet, Dirk Schüler, Christopher T Lefevre
- Proc Natl Acad Sci U S A, 10.1073/pnas.2208648119
A roadmap for the functional annotation of protein families: a community perspective
- Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia Arighi, …, Valerie Wood, Elisha M Wood-Charlson, Jin Xu
- Database (Oxford), 10.1093/database/baac062
Complete Genome Sequence of Tepidibacter sp. Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam
- Stéphanie Fouteau, Vuong Bui Van, Zoé Rouy, …, Pedro H Oliveira, Xavier Mari, Nathalie Pradel
- None, 10.1128/mra.00132-22
From Strain Characterization to Field Authorization: Highlights on Bacillus velezensis Strain B25 Beneficial Properties for Plants and Its Activities on Phytopathogenic Fungi
- Pierre Joly, Alexandra Calteau, Aurélie Wauquier, …, Bastien Cochard, François Lefort, Jean-Yves Berthon
- None, 10.3390/microorganisms9091924
Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period
- Guilhem Royer, Mélanie Mercier Darty, Olivier Clermont, …, Agnès Lefort, Victoire de Lastours, Erick Denamur
- Genome Med, 10.1186/s13073-021-00892-0
Complete Genome Sequences of Two Pseudomonas Species Isolated from Marine Environments of the Pacific Ocean
- Shi-Zhen Wang, Corinne Cruaud, Jean-Marc Aury, …, Benoit Vacherie, Anne Zaparucha, Carine Vergne-Vaxelaire
- None, 10.1128/mra.01062-19
panRGP: a pangenome-based method to predict genomic islands and explore their diversity
- Adelme Bazin, Guillaume Gautreau, Claudine Médigue, David Vallenet, Alexandra Calteau
- Bioinformatics, 10.1093/bioinformatics/btaa792
Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen
- Alastair Muir, Ishwori Gurung, Ana Cehovin, Adelme Bazin, David Vallenet, Vladimir Pelicic
- Nat Commun, 10.1038/s41467-020-19347-y
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis
- David Vallenet, Alexandra Calteau, Mathieu Dubois, …, Zoe Rouy, Valentin Sabatet, Claudine Médigue
- Nucleic Acids Res, 10.1093/nar/gkz926
Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist
- Caroline L Monteil, David Vallenet, Nicolas Menguy, …, Purificación López-GarcÃa, Richard J Weld, Christopher T Lefevre
- Nat Microbiol, 10.1038/s41564-019-0432-7