Video highlight
Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation
- Dileep Kishore, Gabriel Birzu, Zhenjun Hu, …, Charles DeLisi, Kirill S Korolev, Daniel Segrè
- mSystems, 10.1128/msystems.00961-22
Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions
- Charles Jo, David B Bernstein, Natalie Vaisman, …, Natalie Vaisman, Horacio M Frydman, Daniel Segrè
- mSystems, 10.1128/msystems.00017-21
Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability
- Charles Jo, Jing Zhang, Jenny M Tam, …, Ahmad S Khalil, Daniel Segrè, Tzu-Chieh Tang
- None, 10.1016/j.mtbio.2023.100560
Environmental microbiome engineering for the mitigation of climate change
- Michael R Silverstein, Daniel Segrè, Jennifer M Bhatnagar, …, Michael R Silverstein, Daniel Segrè, Jennifer M Bhatnagar
- Glob Chang Biol, 10.1111/gcb.16609
Toward FAIR Representations of Microbial Interactions
- Alan R Pacheco, Charlie Pauvert, Dileep Kishore, …, Charlie Pauvert, Dileep Kishore, Daniel Segrè
- mSystems, 10.1128/msystems.00659-22
Growth instabilities shape morphology and genetic diversity of microbial colonies
- Alexander Golden, Ilija Dukovski, Daniel Segrè, Kirill S Korolev
- Phys Biol, 10.1088/1478-3975/ac8514
Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies
- Elena Forchielli, Daniel Sher, Daniel Segrè, …, Elena Forchielli, Daniel Sher, Daniel Segrè
- mSystems, 10.1128/msystems.00070-22
Computational design and engineering of an Escherichia coli strain producing the nonstandard amino acid para -aminophenylalanine
- Ali R Zomorrodi, Colin Hemez, Pol Arranz-Gibert, Terrence Wu, Farren J Isaacs, Daniel Segrè
- None, 10.1016/j.isci.2022.104562
Microbial metabolites in the marine carbon cycle
- Mary Ann Moran, Elizabeth B Kujawinski, William F Schroer, …, Ashley Shade, Matthew B Sullivan, Assaf Vardi
- Nat Microbiol, 10.1038/s41564-022-01090-3
A comparative whole-genome approach identifies bacterial traits for marine microbial interactions
- Luca Zoccarato, Daniel Sher, Takeshi Miki, Daniel Segrè, Hans-Peter Grossart
- Commun Biol, 10.1038/s42003-022-03184-4
Protein cost minimization promotes the emergence of coenzyme redundancy
- Joshua E Goldford, Ashish B George, Avi I Flamholz, Daniel Segrè
- Proc Natl Acad Sci U S A, 10.1073/pnas.2110787119
animalcules: interactive microbiome analytics and visualization in R
- Yue Zhao, Anthony Federico, Tyler Faits, …, Daniel Segrè, Stefano Monti, W Evan Johnson
- Microbiome, 10.1186/s40168-021-01013-0
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis
- David B Bernstein, Snorre Sulheim, Eivind Almaas, …, Snorre Sulheim, Eivind Almaas, Daniel Segrè
- Genome Biol, 10.1186/s13059-021-02289-z