CanIsoNet: a database to study the functional impact of isoform switching events in diseases
- Tülay Karakulak, Damian Szklarczyk, Cemil Can Saylan, …, Holger Moch, Christian von Mering, Abdullah Kahraman
- None, 10.1093/bioadv/vbad050
Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks
- Nadezhda T Doncheva, John H Morris, Henrietta Holze, …, Damian Szklarczyk, Christian von Mering, Lars J Jensen
- J Proteome Res, 10.1021/acs.jproteome.2c00651
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
- Anthony Fullam, Ivica Letunic, Thomas S B Schmidt, …, Christian von Mering, Peer Bork, Daniel R Mende
- Nucleic Acids Res, 10.1093/nar/gkac1078
eggNOG 6.0: enabling comparative genomics across 12Â 535 organisms
- Ana Hernández-Plaza, Damian Szklarczyk, Jorge Botas, …, Peer Bork, Christian von Mering, Jaime Huerta-Cepas
- Nucleic Acids Res, 10.1093/nar/gkac1022
Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments
- Annika L Gable, Damian Szklarczyk, David Lyon, João F Matias Rodrigues, Christian von Mering
- Brief Bioinform, 10.1093/bib/bbac355
GUNC: detection of chimerism and contamination in prokaryotic genomes
- Askarbek Orakov, Anthony Fullam, Luis Pedro Coelho, …, Daniel R Mende, Thomas S B Schmidt, Peer Bork
- Genome Biol, 10.1186/s13059-021-02393-0
Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network
- Abdullah Kahraman, Tülay Karakulak, Damian Szklarczyk, Christian von Mering
- Sci Rep, 10.1038/s41598-020-71221-5
Analysis of the Human Kinome and Phosphatome by Mass Cytometry Reveals Overexpression-Induced Effects on Cancer-Related Signaling
- Xiao-Kang Lun, Damian Szklarczyk, Attila Gábor, …, Julio Saez-Rodriguez, Christian von Mering, Bernd Bodenmiller
- Mol Cell, 10.1016/j.molcel.2019.04.021
Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies
- Davide Heller, Damian Szklarczyk, Christian von Mering
- BMC Bioinformatics, 10.1186/s12859-019-2828-z
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- Jaime Huerta-Cepas, Damian Szklarczyk, Davide Heller, …, Lars J Jensen, Christian von Mering, Peer Bork
- Nucleic Acids Res, 10.1093/nar/gky1085
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- Jaime Huerta-Cepas, Kristoffer Forslund, Luis Pedro Coelho, …, Lars Juhl Jensen, Christian von Mering, Peer Bork
- Mol Biol Evol, 10.1093/molbev/msx148