iHam and pyHam: visualizing and processing hierarchical orthologous groups
- Clément-Marie Train, Miguel Pignatelli, Adrian Altenhoff, Christophe Dessimoz
- Bioinformatics, 10.1093/bioinformatics/bty994
Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome
- Ivana Piližota, Clément-Marie Train, Adrian Altenhoff, Henning Redestig, Christophe Dessimoz
- Bioinformatics, 10.1093/bioinformatics/bty772
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
- Adrian M Altenhoff, Natasha M Glover, Clément-Marie Train, …, Henning Redestig, Gaston H Gonnet, Christophe Dessimoz
- Nucleic Acids Res, 10.1093/nar/gkx1019
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference
- Clément-Marie Train, Natasha M Glover, Gaston H Gonnet, Adrian M Altenhoff, Christophe Dessimoz
- Bioinformatics, 10.1093/bioinformatics/btx229
Standardized benchmarking in the quest for orthologs
- Adrian M Altenhoff, Brigitte Boeckmann, Salvador Capella-Gutierrez, …, Paul D Thomas, Erik Sonnhammer, Christophe Dessimoz
- Nat Methods, 10.1038/nmeth.3830
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
- Adrian M Altenhoff, Nives Škunca, Natasha Glover, …, Henning Redestig, Gaston H Gonnet, Christophe Dessimoz
- Nucleic Acids Res, 10.1093/nar/gku1158