Academic lineage
- Bernhard Ø Palsson - Ph.D. student
Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli
- Bin Du, Laurence Yang, Colton J Lloyd, Xin Fang, Bernhard O Palsson
- PLoS Comput Biol, 10.1371/journal.pcbi.1007525
Adaptive laboratory evolution of Escherichia coli under acid stress
- Bin Du, Connor A Olson, Anand V Sastry, …, Ying Hefner, Adam M Feist, Bernhard O Palsson
- Microbiology (Reading), 10.1099/mic.0.000867
Estimating Metabolic Equilibrium Constants: Progress and Future Challenges
- Bin Du, Daniel C Zielinski, Bernhard O Palsson
- Trends Biochem Sci, 10.1016/j.tibs.2018.09.009
Thermodynamic favorability and pathway yield as evolutionary tradeoffs in biosynthetic pathway choice
- Bin Du, Daniel C Zielinski, Jonathan M Monk, Bernhard O Palsson
- Proc Natl Acad Sci U S A, 10.1073/pnas.1805367115
Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa
- Xin Fang, Jonathan M Monk, Nathan Mih, …, Yara Seif, Larry Smarr, Bernhard O Palsson
- None, 10.1186/s12918-018-0587-5
Temperature-Dependent Estimation of Gibbs Energies Using an Updated Group-Contribution Method
- Bin Du, Zhen Zhang, Sharon Grubner, James T Yurkovich, Bernhard O Palsson, Daniel C Zielinski
- Biophys J, 10.1016/j.bpj.2018.04.030
Topological and kinetic determinants of the modal matrices of dynamic models of metabolism
- Bin Du, Daniel C Zielinski, Bernhard O Palsson
- PLoS One, 10.1371/journal.pone.0189880
Evaluation of rate law approximations in bottom-up kinetic models of metabolism
- Bin Du, Daniel C Zielinski, Erol S Kavvas, …, Kayla E Ruggiero, Garri A Arzumanyan, Bernhard O Palsson
- None, 10.1186/s12918-016-0283-2
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data
- Laurence Yang, Justin Tan, Edward J O’Brien, …, Yuekai Sun, Michael A Saunders, Bernhard O Palsson
- Proc Natl Acad Sci U S A, 10.1073/pnas.1501384112
WNT3A promotes myogenesis of human embryonic stem cells and enhances in vivo engraftment
- Yongsung Hwang, Samuel Suk, Yu-Ru Vernon Shih, …, Yun Xie, Ziyang Li, Shyni Varghese
- Sci Rep, 10.1038/srep05916
Directed in vitro myogenesis of human embryonic stem cells and their in vivo engraftment
- Yongsung Hwang, Samuel Suk, Susan Lin, …, Aaron Mitchell, Alessandra Sacco, Shyni Varghese
- PLoS One, 10.1371/journal.pone.0072023