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A Holistic Approach from Systems Biology Reveals the Direct Influence of the Quorum-Sensing Phenomenon on Pseudomonas aeruginosa Metabolism to Pyoverdine Biosynthesis
- Diana Carolina Clavijo-Buriticá, Catalina Arévalo-Ferro, Andrés Fernando González Barrios, …, Diana Carolina Clavijo-Buriticá, Catalina Arévalo-Ferro, Andrés Fernando González Barrios
- None, 10.3390/metabo13050659
Elucidating yeast glycolytic dynamics at steady state growth and glucose pulses through kinetic metabolic modeling
- David Lao-Martil, Joep P J Schmitz, Bas Teusink, …, Joep P J Schmitz, Bas Teusink, Natal A W van Riel
- Metab Eng, 10.1016/j.ymben.2023.03.005
Ethanol-lactate transition of Lachancea thermotolerans is linked to nitrogen metabolism
- Julius Battjes, Chrats Melkonian, Sebastián N Mendoza, …, Ahmad A Zeidan, Douwe Molenaar, Bas Teusink
- Food Microbiol, 10.1016/j.fm.2022.104167
A Computational Toolbox to Investigate the Metabolic Potential and Resource Allocation in Fission Yeast
- Pranas Grigaitis, Douwe A J Grundel, Eunice van Pelt-KleinJan, …, Sebastian Mendoza Farias, Bas Teusink, Johan H van Heerden
- mSystems, 10.1128/msystems.00423-22
Metabolic Modeling of Wine Fermentation at Genome Scale
- Sebastián N Mendoza, Pedro A Saa, Bas Teusink, Eduardo Agosin
- Methods Mol Biol, 10.1007/978-1-0716-1831-8_16
Kinetic Modeling of Saccharomyces cerevisiae Central Carbon Metabolism: Achievements, Limitations, and Opportunities
- David Lao-Martil, Koen J A Verhagen, Joep P J Schmitz, Bas Teusink, S Aljoscha Wahl, Natal A W van Riel
- None, 10.3390/metabo12010074
A Multiphase Multiobjective Dynamic Genome-Scale Model Shows Different Redox Balancing among Yeast Species of the Saccharomyces Genus in Fermentation
- David Henriques, Romain Minebois, Sebastián N Mendoza, …, Bas Teusink, Amparo Querol, Eva Balsa-Canto
- mSystems, 10.1128/msystems.00260-21
Population dynamics of microbial cross-feeding are determined by co-localization probabilities and cooperation-independent cheater growth
- Rinke J van Tatenhove-Pel, Daan H de Groot, Anjani S Bisseswar, …, Anjani S Bisseswar, Bas Teusink, Herwig Bachmann
- ISME J, 10.1038/s41396-021-00986-y
A centrifugation-based clearing method allows high-throughput acidification and growth-rate measurements in milk
- Sieze Douwenga, Patrick Janssen, Bas Teusink, Herwig Bachmann
- J Dairy Sci, 10.3168/jds.2020-20108
Understanding FBA Solutions under Multiple Nutrient Limitations
- Eunice van Pelt-KleinJan, Daan H de Groot, Bas Teusink
- None, 10.3390/metabo11050257
Unlocking Elementary Conversion Modes: ecmtool Unveils All Capabilities of Metabolic Networks
- Tom J Clement, Erik B Baalhuis, Bas Teusink, Frank J Bruggeman, Robert Planqué, Daan H de Groot
- None, 10.1016/j.patter.2020.100177
Serial propagation in water-in-oil emulsions selects for Saccharomyces cerevisiae strains with a reduced cell size or an increased biomass yield on glucose
- Rinke Johanna van Tatenhove-Pel, Emile Zwering, Daan Floris Boreel, …, Dennis Botman, Bas Teusink, Herwig Bachmann
- Metab Eng, 10.1016/j.ymben.2020.12.005
Searching for principles of microbial physiology
- Frank J Bruggeman, Robert Planqué, Douwe Molenaar, Bas Teusink
- FEMS Microbiol Rev, 10.1093/femsre/fuaa034
Lifestyle, metabolism and environmental adaptation in Lactococcus lactis
- Michiel Kleerebezem, Herwig Bachmann, Eunice van Pelt-KleinJan, …, Eddy J Smid, Bas Teusink, Oscar van Mastrigt
- FEMS Microbiol Rev, 10.1093/femsre/fuaa033
Enhancement of amino acid production and secretion by Lactococcus lactis using a droplet-based biosensing and selection system
- Jhonatan A Hernandez-Valdes, Myrthe Aan de Stegge, Jos Hermans, …, Bas Teusink, Herwig Bachmann, Oscar P Kuipers
- Metab Eng, 10.1016/j.mec.2020.e00133
Elementary Growth Modes provide a molecular description of cellular self-fabrication
- Daan H de Groot, Josephus Hulshof, Bas Teusink, Frank J Bruggeman, Robert Planqué
- PLoS Comput Biol, 10.1371/journal.pcbi.1007559
Genome-Scale Metabolic Reconstruction of Acetobacter pasteurianus 386B, a Candidate Functional Starter Culture for Cocoa Bean Fermentation
- Rudy Pelicaen, Didier Gonze, Bas Teusink, Luc De Vuyst, Stefan Weckx
- None, 10.3389/fmicb.2019.02801
A systematic assessment of current genome-scale metabolic reconstruction tools
- Sebastián N Mendoza, Brett G Olivier, Douwe Molenaar, Bas Teusink
- Genome Biol, 10.1186/s13059-019-1769-1
The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates
- Daan H de Groot, Coco van Boxtel, Robert Planqué, Frank J Bruggeman, Bas Teusink
- PLoS Comput Biol, 10.1371/journal.pcbi.1006858
In vivo characterisation of fluorescent proteins in budding yeast
- Dennis Botman, Daan Hugo de Groot, Phillipp Schmidt, Joachim Goedhart, Bas Teusink
- Sci Rep, 10.1038/s41598-019-38913-z
A genome-scale metabolic network of the aroma bacterium Leuconostoc mesenteroides subsp. cremoris
- Emrah Özcan, S Selvin Selvi, Emrah Nikerel, Bas Teusink, Ebru Toksoy Öner, Tunahan Çakır
- Appl Microbiol Biotechnol, 10.1007/s00253-019-09630-4
Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength
- Claire E Price, Filipe Branco Dos Santos, Anne Hesseling, …, Bert Poolman, Bas Teusink, Oscar P Kuipers
- BMC Ecol Evol, 10.1186/s12862-018-1331-x
Maintaining maximal metabolic flux by gene expression control
- Robert Planqué, Josephus Hulshof, Bas Teusink, Johannes C Hendriks, Frank J Bruggeman
- PLoS Comput Biol, 10.1371/journal.pcbi.1006412
Further Elucidation of Galactose Utilization in Lactococcus lactis MG1363
- Ana Solopova, Herwig Bachmann, Bas Teusink, Jan Kok, Oscar P Kuipers
- None, 10.3389/fmicb.2018.01803
Training for translation between disciplines: a philosophy for life and data sciences curricula
- K Anton Feenstra, Sanne Abeln, Johan A Westerhuis, …, Bas Teusink, Huub C J Hoefsloot, Jaap Heringa
- Bioinformatics, 10.1093/bioinformatics/bty233
Dynamic elementary mode modelling of non-steady state flux data
- Abel Folch-Fortuny, Bas Teusink, Huub C J Hoefsloot, Age K Smilde, Alberto Ferrer
- None, 10.1186/s12918-018-0589-3
Understanding start-up problems in yeast glycolysis
- Gosse B Overal, Bas Teusink, Frank J Bruggeman, Josephus Hulshof, Robert Planqué
- Math Biosci, 10.1016/j.mbs.2018.03.007
Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies
- Nils Giordano, Francis Mairet, Jean-Luc Gouzé, Johannes Geiselmann, Hidde de Jong
- PLoS Comput Biol, 10.1371/journal.pcbi.1004802
Distinctive non-methanogen archaeal populations in anaerobic digestion
- Si Chen, Qiang He
- Appl Microbiol Biotechnol, 10.1007/s00253-015-6951-0