Academic lineage
New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells
- Nantia Leonidou, Alina Renz, Reihaneh Mostolizadeh, …, Alina Renz, Reihaneh Mostolizadeh, Andreas Dräger
- PLoS Comput Biol, 10.1371/journal.pcbi.1010903
Genome-scale model of Pseudomonas aeruginosa metabolism unveils virulence and drug potentiation
- Sanjeev Dahal, Alina Renz, Andreas Dräger, …, Alina Renz, Andreas Dräger, Laurence Yang
- Commun Biol, 10.1038/s42003-023-04540-8
Hierarchical modelling of microbial communities
- Manuel Glöckler, Andreas Dräger, Reihaneh Mostolizadeh, …, Manuel Glöckler, Andreas Dräger, Reihaneh Mostolizadeh
- Bioinformatics, 10.1093/bioinformatics/btad040
Towards the human nasal microbiome: Simulating D. pigrum and S. aureus
- Reihaneh Mostolizadeh, Manuel Glöckler, Andreas Dräger, …, Reihaneh Mostolizadeh, Manuel Glöckler, Andreas Dräger
- Front Cell Infect Microbiol, 10.3389/fcimb.2022.925215
NCMW: A Python Package to Analyze Metabolic Interactions in the Nasal Microbiome
- Manuel Glöckler, Andreas Dräger, Reihaneh Mostolizadeh
- None, 10.3389/fbinf.2022.827024
A Computational Model of Bacterial Population Dynamics in Gastrointestinal Yersinia enterocolitica Infections in Mice
- Janina K Geißert, Erwin Bohn, Reihaneh Mostolizadeh, …, Alina Renz, Martin Eichner, Monika S Schütz
- None, 10.3390/biology11020297
High-Quality Genome-Scale Reconstruction of Corynebacterium glutamicum ATCC 13032
- Martina Feierabend, Alina Renz, Elisabeth Zelle, Katharina Nöh, Wolfgang Wiechert, Andreas Dräger
- None, 10.3389/fmicb.2021.750206
An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism
- Dawson D Payne, Alina Renz, Laura J Dunphy, Taylor Lewis, Andreas Dräger, Jason A Papin
- NPJ Syst Biol Appl, 10.1038/s41540-021-00198-2
Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus
- Alina Renz, Andreas Dräger
- NPJ Syst Biol Appl, 10.1038/s41540-021-00188-4
Genome-Scale Metabolic Model of Infection with SARS-CoV-2 Mutants Confirms Guanylate Kinase as Robust Potential Antiviral Target
- Alina Renz, Lina Widerspick, Andreas Dräger
- Genes (Basel), 10.3390/genes12060796
First Genome-Scale Metabolic Model of Dolosigranulum pigrum Confirms Multiple Auxotrophies
- Alina Renz, Lina Widerspick, Andreas Dräger
- None, 10.3390/metabo11040232
FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2
- Alina Renz, Lina Widerspick, Andreas Dräger, Alina Renz, Lina Widerspick, Andreas Dräger
- Bioinformatics, 10.1093/bioinformatics/btaa813
Computational Model Informs Effective Control Interventions against Y. enterocolitica Co-Infection
- Reihaneh Mostolizadeh, Andreas Dräger
- None, 10.3390/biology9120431
Genome-Scale Metabolic Modeling of Escherichia coli and Its Chassis Design for Synthetic Biology Applications
- Bashir Sajo Mienda, Andreas Dräger
- Methods Mol Biol, 10.1007/978-1-0716-0822-7_16
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms
- Marek Ostaszewski, Alexander Mazein, Marc E Gillespie, …, Charles Auffray, Rudi Balling, Reinhard Schneider
- Sci Data, 10.1038/s41597-020-00589-w
Systems biology graphical notation markup language (SBGNML) version 0.3
- Frank T Bergmann, Tobias Czauderna, Ugur Dogrusoz, …, Alexander Mazein, Michael L Blinov, Augustin Luna
- J Integr Bioinform, 10.1515/jib-2020-0016
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0
- Adrien Rougny, Vasundra Touré, Stuart Moodie, …, Anatoly Sorokin, Falk Schreiber, Augustin Luna
- J Integr Bioinform, 10.1515/jib-2019-0022
Insights into Dynamic Network States Using Metabolomic Data
- Reihaneh Mostolizadeh, Andreas Dräger, Neema Jamshidi
- Methods Mol Biol, 10.1007/978-1-4939-9236-2_15
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes
- Paolo Romano, Arnaud Céol, Andreas Dräger, …, Soo-Yong Shin, Junfeng Xia, Alfonso Urso
- BMC Bioinformatics, 10.1186/s12859-019-2681-0
Systems Medicine: hype or revolution?
- Steffen Fleßa, Christin Thum, Susan Raths, Tobias Fischer, Pia Erdmann, Martin Langanke
- Per Med, 10.2217/pme-2016-0039
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core
- Michael Hucka, Frank T Bergmann, Stefan Hoops, …, James C Schaff, Lucian P Smith, Darren J Wilkinson
- J Integr Bioinform, 10.2390/biecoll-jib-2015-266