Computational design and engineering of an Escherichia coli strain producing the nonstandard amino acid para -aminophenylalanine
- Ali R Zomorrodi, Colin Hemez, Pol Arranz-Gibert, Terrence Wu, Farren J Isaacs, Daniel Segrè
- None, 10.1016/j.isci.2022.104562
Characterization of the blood microbiota in children with Celiac disease
- Isha Mehrotra, Gloria Serena, Murat Cetinbas, …, Ruslan I Sadreyev, Alessio Fasano, Maureen M Leonard
- None, 10.1016/j.crmicr.2021.100069
Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study
- Maureen M Leonard, Francesco Valitutti, Hiren Karathia, …, Ali R Zomorrodi, Rita Colwell, Alessio Fasano
- Proc Natl Acad Sci U S A, 10.1073/pnas.2020322118
Microbiota and Metabolomic Patterns in the Breast Milk of Subjects with Celiac Disease on a Gluten-Free Diet
- Katherine L Olshan, Ali R Zomorrodi, Meritxell Pujolassos, …, Victoria Kenyon, Alessio Fasano, Maureen M Leonard
- Nutrients, 10.3390/nu13072243
Gut microbiota in Celiac Disease: microbes, metabolites, pathways and therapeutics
- Katherine L Olshan, Maureen M Leonard, Gloria Serena, Ali R Zomorrodi, Alessio Fasano
- Expert Rev Clin Immunol, 10.1080/1744666x.2021.1840354
Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease
- Maureen M Leonard, Hiren Karathia, Meritxell Pujolassos, …, Nur Hasan, Ali R Zomorrodi, Alessio Fasano
- Microbiome, 10.1186/s40168-020-00906-w
Synthetic Ecology of Microbes: Mathematical Models and Applications
- Ali R Zomorrodi, Daniel Segrè
- J Mol Biol, 10.1016/j.jmb.2015.10.019
A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data
- Ali Khodayari, Ali R Zomorrodi, James C Liao, Costas D Maranas
- Metab Eng, 10.1016/j.ymben.2014.05.014
d-OptCom: Dynamic multi-level and multi-objective metabolic modeling of microbial communities
- Ali R Zomorrodi, Mohammad Mazharul Islam, Costas D Maranas
- ACS Synth Biol, 10.1021/sb4001307
k-OptForce: integrating kinetics with flux balance analysis for strain design
- Anupam Chowdhury, Ali R Zomorrodi, Costas D Maranas
- PLoS Comput Biol, 10.1371/journal.pcbi.1003487