How to build phylogenetic species trees with OMA
- David Dylus, Yannis Nevers, Adrian M Altenhoff, …, Antoine Gürtler, Christophe Dessimoz, Natasha M Glover
- F1000Res, 10.12688/f1000research.23790.2
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
- Naihui Zhou, Yuxiang Jiang, Timothy R Bergquist, …, Casey S Greene, Predrag Radivojac, Iddo Friedberg
- Genome Biol, 10.1186/s13059-019-1835-8
OMA standalone: orthology inference among public and custom genomes and transcriptomes
- Adrian M Altenhoff, Jeremy Levy, Magdalena Zarowiecki, …, Natasha M Glover, David Dylus, Christophe Dessimoz
- Genome Res, 10.1101/gr.243212.118
Assigning confidence scores to homoeologs using fuzzy logic
- Natasha M Glover, Adrian Altenhoff, Christophe Dessimoz
- PeerJ, 10.7717/peerj.6231
iHam and pyHam: visualizing and processing hierarchical orthologous groups
- Clément-Marie Train, Miguel Pignatelli, Adrian Altenhoff, Christophe Dessimoz
- Bioinformatics, 10.1093/bioinformatics/bty994
Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome
- Ivana Piližota, Clément-Marie Train, Adrian Altenhoff, Henning Redestig, Christophe Dessimoz
- Bioinformatics, 10.1093/bioinformatics/bty772