Academic lineage
RBAtools: a programming interface for Resource Balance Analysis models
- Oliver Bodeit, Inès Ben Samir, Jonathan R Karr, …, Jonathan R Karr, Anne Goelzer, Wolfram Liebermeister
- None, 10.1093/bioadv/vbad056
BioSimulators: a central registry of simulation engines and services for recommending specific tools
- Bilal Shaikh, Lucian P Smith, Dan Vasilescu, …, Herbert M Sauro, Ion I Moraru, Jonathan R Karr
- Nucleic Acids Res, 10.1093/nar/gkac331
Model Balancing: A Search for In-Vivo Kinetic Constants and Consistent Metabolic States
- Wolfram Liebermeister, Elad Noor
- None, 10.3390/metabo11110749
Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs
- Thierry D G A Mondeel, Oleksandr Ivanov, Hans V Westerhoff, Wolfram Liebermeister, Matteo Barberis
- NPJ Syst Biol Appl, 10.1038/s41540-020-0125-0
Automated generation of bacterial resource allocation models
- Ana Bulović, Stephan Fischer, Marc Dinh, …, Edda Klipp, Vincent Fromion, Anne Goelzer
- Metab Eng, 10.1016/j.ymben.2019.06.001
Parameter balancing: consistent parameter sets for kinetic metabolic models
- Timo Lubitz, Wolfram Liebermeister
- Bioinformatics, 10.1093/bioinformatics/btz129