Metabolic interaction models recapitulate leaf microbiota ecology
- Martin Schäfer, Alan R Pacheco, Rahel Künzler, …, Evangelia Vayena, Vassily Hatzimanikatis, Julia A Vorholt
- Science, 10.1126/science.adf5121
Optimal enzyme utilization suggests that concentrations and thermodynamics determine binding mechanisms and enzyme saturations
- Asli Sahin, Daniel R Weilandt, Asli Sahin, …, Asli Sahin, Daniel R Weilandt, Vassily Hatzimanikatis
- Nat Commun, 10.1038/s41467-023-38159-4
Dynamics of CLIMP-63 S-acylation control ER morphology
- Patrick A Sandoz, Robin A Denhardt-Eriksson, Laurence Abrami, …, Francisco S Mesquita, Vassily Hatzimanikatis, F Gisou van der Goot
- Nat Commun, 10.1038/s41467-023-35921-6
Dynamic partitioning of branched-chain amino acids-derived nitrogen supports renal cancer progression
- Marco Sciacovelli, Aurelien Dugourd, Lorea Valcarcel Jimenez, …, Sakari Vanharanta, Julio Saez-Rodriguez, Christian Frezza
- Nat Commun, 10.1038/s41467-022-35036-4
Symbolic kinetic models in python (SKiMpy): intuitive modeling of large-scale biological kinetic models
- Daniel R Weilandt, Pierre Salvy, Maria Masid, …, Robin Denhardt-Erikson, Zhaleh Hosseini, Vassily Hatzimanikatis
- Bioinformatics, 10.1093/bioinformatics/btac787
Computational tools and resources for designing new pathways to small molecules
- Anastasia Sveshnikova, Homa MohammadiPeyhani, Vassily Hatzimanikatis
- Curr Opin Biotechnol, 10.1016/j.copbio.2022.102722
ARBRE: Computational resource to predict pathways towards industrially important aromatic compounds
- Anastasia Sveshnikova, Homa MohammadiPeyhani, Vassily Hatzimanikatis
- Metab Eng, 10.1016/j.ymben.2022.03.013
Expanding biochemical knowledge and illuminating metabolic dark matter with ATLASx
- Homa MohammadiPeyhani, Jasmin Hafner, Anastasia Sveshnikova, Victor Viterbo, Vassily Hatzimanikatis
- Nat Commun, 10.1038/s41467-022-29238-z