S1000: a better taxonomic name corpus for biomedical information extraction
- Jouni Luoma, Katerina Nastou, Tomoko Ohta, …, Evangelos Pafilis, Lars Juhl Jensen, Sampo Pyysalo
- Bioinformatics, 10.1093/bioinformatics/btad369
Cell line name recognition in support of the identification of synthetic lethality in cancer from text
- Suwisa Kaewphan, Sofie Van Landeghem, Tomoko Ohta, Yves Van de Peer, Filip Ginter, Sampo Pyysalo
- Bioinformatics, 10.1093/bioinformatics/btv570
Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013
- Sampo Pyysalo, Tomoko Ohta, Rafal Rak, …, Sung-Pil Choi, Jun’ichi Tsujii, Sophia Ananiadou
- BMC Bioinformatics, 10.1186/1471-2105-16-s10-s2
A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text
- Makoto Miwa, Tomoko Ohta, Rafal Rak, …, Douglas B Kell, Sampo Pyysalo, Sophia Ananiadou
- Bioinformatics, 10.1093/bioinformatics/btt227
Wide coverage biomedical event extraction using multiple partially overlapping corpora
- Makoto Miwa, Sampo Pyysalo, Tomoko Ohta, Sophia Ananiadou
- BMC Bioinformatics, 10.1186/1471-2105-14-175
BioCause: Annotating and analysing causality in the biomedical domain
- Claudiu Mihăilă, Tomoko Ohta, Sampo Pyysalo, Sophia Ananiadou
- BMC Bioinformatics, 10.1186/1471-2105-14-2
Event extraction across multiple levels of biological organization
- Sampo Pyysalo, Tomoko Ohta, Makoto Miwa, Han-Cheol Cho, Jun’ichi Tsujii, Sophia Ananiadou
- Bioinformatics, 10.1093/bioinformatics/bts407
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011
- Sampo Pyysalo, Tomoko Ohta, Rafal Rak, …, Bruno Sobral, Jun’ichi Tsujii, Sophia Ananiadou
- BMC Bioinformatics, 10.1186/1471-2105-13-s11-s2