Academic lineage
Transcriptional reprogramming of skeletal muscle stem cells by the niche environment
- Felicia Lazure, Rick Farouni, Korin Sahinyan, …, Arezu Jahani-Asl, Hamed S Najafabadi, Vahab D Soleimani
- Nat Commun, 10.1038/s41467-023-36265-x
Quantification of Muscle Satellite Stem Cell Divisions by High-Content Analysis
- William Chen, Theodore J Perkins, Michael A Rudnicki
- Methods Mol Biol, 10.1007/978-1-0716-2772-3_29
Costs of Next-Generation Sequencing Assays in Non-Small Cell Lung Cancer: A Micro-Costing Study
- Srishti Kumar, Alexandria Bennett, Pearl A Campbell, …, Harmanjatinder S Sekhon, David J Stewart, Kednapa Thavorn
- Curr Oncol, 10.3390/curroncol29080416
BATL: Bayesian annotations for targeted lipidomics
- Justin G Chitpin, Anuradha Surendra, Thao T Nguyen, …, Miroslava Cuperlovic-Culf, Steffany A L Bennett, Theodore J Perkins
- Bioinformatics, 10.1093/bioinformatics/btab854
WACS: improving ChIP-seq peak calling by optimally weighting controls
- Aseel Awdeh, Marcel Turcotte, Theodore J Perkins
- BMC Bioinformatics, 10.1186/s12859-020-03927-2
Bayesian correlation is a robust gene similarity measure for single-cell RNA-seq data
- Daniel Sanchez-Taltavull, Theodore J Perkins, Noelle Dommann, …, Daniel Candinas, Deborah Stroka, Guido Beldi
- None, 10.1093/nargab/lqaa002
Absolute quantification of transcription factors in human erythropoiesis using selected reaction monitoring mass spectrometry
- Mark A Gillespie, Carmen G Palii, Daniel Sanchez-Taltavull, Theodore J Perkins, Marjorie Brand, Jeffrey A Ranish
- STAR Protoc, 10.1016/j.xpro.2020.100216
Accuracy and reproducibility of somatic point mutation calling in clinical-type targeted sequencing data
- Ali Karimnezhad, Gareth A Palidwor, Kednapa Thavorn, …, Pearl A Campbell, Bryan Lo, Theodore J Perkins
- BMC Med Genomics, 10.1186/s12920-020-00803-z
Myf6/MRF4 is a myogenic niche regulator required for the maintenance of the muscle stem cell pool
- Felicia Lazure, Darren M Blackburn, Aldo H Corchado, …, Theodore J Perkins, Arezu Jahani-Asl, Vahab D Soleimani
- EMBO Rep, 10.15252/embr.201949499
Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis
- Mark A Gillespie, Carmen G Palii, Daniel Sanchez-Taltavull, …, Theodore J Perkins, Jeffrey A Ranish, Marjorie Brand
- Mol Cell, 10.1016/j.molcel.2020.03.031
Establishment of macaque trophoblast stem cell lines derived from cynomolgus monkey blastocysts
- Shoma Matsumoto, Christopher J Porter, Naomi Ogasawara, …, Theodore J Perkins, William L Stanford, Satoshi Tanaka
- Sci Rep, 10.1038/s41598-020-63602-7
Transcriptomically Guided Mesendoderm Induction of Human Pluripotent Stem Cells Using a Systematically Defined Culture Scheme
- Richard L Carpenedo, Sarah Y Kwon, R Matthew Tanner, …, Duncan J Stewart, Theodore J Perkins, William L Stanford
- Stem Cell Reports, 10.1016/j.stemcr.2019.11.001
Human gene expression variability and its dependence on methylation and aging
- Nasser Bashkeel, Theodore J Perkins, Mads Kærn, Jonathan M Lee
- BMC Genomics, 10.1186/s12864-019-6308-7
High-resolution genome-wide expression analysis of single myofibers using SMART-Seq
- Darren M Blackburn, Felicia Lazure, Aldo H Corchado, Theodore J Perkins, Hamed S Najafabadi, Vahab D Soleimani
- J Biol Chem, 10.1074/jbc.ra119.011506
Preclinical rationale for entinostat in embryonal rhabdomyosarcoma
- Narendra Bharathy, Noah E Berlow, Eric Wang, …, Christopher R Vakoc, Joel E Michalek, Charles Keller
- Skelet Muscle, 10.1186/s13395-019-0198-x