Recent advances in mass spectrometry-based computational metabolomics
- Timothy M D Ebbels, Justin J J van der Hooft, Haley Chatelaine, …, Nicola Zamboni, Soha Hassoun, Ewy A Mathé
- Curr Opin Chem Biol, 10.1016/j.cbpa.2023.102288
Using graph neural networks for site-of-metabolism prediction and its applications to ranking promiscuous enzymatic products
- Vladimir Porokhin, Li-Ping Liu, Soha Hassoun, …, Vladimir Porokhin, Li-Ping Liu, Soha Hassoun
- Bioinformatics, 10.1093/bioinformatics/btad089
Analysis of metabolic network disruption in engineered microbial hosts due to enzyme promiscuity
- Vladimir Porokhin, Sara A Amin, Trevor B Nicks, Venkatesh Endalur Gopinarayanan, Nikhil U Nair, Soha Hassoun
- Metab Eng, 10.1016/j.mec.2021.e00170
Enzyme Promiscuity Prediction Using Hierarchy-Informed Multi-Label Classification
- Gian Marco Visani, Michael C Hughes, Soha Hassoun
- Bioinformatics, 10.1093/bioinformatics/btab054
Learning graph representations of biochemical networks and its application to enzymatic link prediction
- Julie Jiang, Li-Ping Liu, Soha Hassoun, …, Julie Jiang, Li-Ping Liu, Soha Hassoun
- Bioinformatics, 10.1093/bioinformatics/btaa881
Pathway-Activity Likelihood Analysis and Metabolite Annotation for Untargeted Metabolomics Using Probabilistic Modeling
- Ramtin Hosseini, Neda Hassanpour, Li-Ping Liu, Soha Hassoun
- None, 10.3390/metabo10050183
ASAP-SML: An antibody sequence analysis pipeline using statistical testing and machine learning
- Xinmeng Li, James A Van Deventer, Soha Hassoun
- PLoS Comput Biol, 10.1371/journal.pcbi.1007779
Biological Filtering and Substrate Promiscuity Prediction for Annotating Untargeted Metabolomics
- Neda Hassanpour, Nicholas Alden, Rani Menon, Arul Jayaraman, Kyongbum Lee, Soha Hassoun
- None, 10.3390/metabo10040160
Towards scaling elementary flux mode computation
- Ehsan Ullah, Mona Yosafshahi, Soha Hassoun
- Brief Bioinform, 10.1093/bib/bbz094